Query= MSMg01no083_i23.b1 MSMg01no083_i23.b1 CHROMAT_FILE:
MSMg01no083_i23.b1 PHD_FILE: MSMg01no083_i23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:19 2005
(522 letters)
>mm_chr4_150797536_150798458
Length = 923
Score = 841 bits (435), Expect = 0.0
Identities = 494/521 (94%), Gaps = 16/521 (3%)
Strand = Plus / Minus
Query: 4 gaattctagaaaga-gtctccacacagttctgactaccggtcagaccttgcaggagagac 62
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 gaattctagaaagaggt-tccacacagttctgactaccggtcagaccttgcaggagagac 593
Query: 63 aggagccgagacagtgatggctggacccacacccggacctgaaaccacttagctacagat 122
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 aggagccgagccagtgatggctggacccacacccggacctgaaaccacttagctacagat 533
Query: 123 agatacctcttgcctctgtttaaacctaaacctcatgtcaaggccctcaaagctagagtt 182
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 532 agatacctcttgcctctgtttaaacctaaacctcatgtcaagaccctcaaagctagagtt 473
Query: 183 gggggtcacgacacctctgtttcttttcccgatacagccatgttcttcttcctgtgcctt 242
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 472 gggggtcatgacacctctgtttcttttcccgatacggccatgttcttcttcctgtgcctt 413
Query: 243 ttgcggttgtttcactaagtgaccgacagaggctgtgcggctaagcctagattgttgtgt 302
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 412 ttgcggttgtttcactaagtgaccgacagaggctgtgcggctaagcctagattgttatgt 353
Query: 303 ctgccaggatccaggtttggaccctttgactgttgtgataatagtggccccctgtaacta 362
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 ctgccaggatccaggcttggaccctttgactgttgtgataatagtggccccctgtaacta 293
Query: 363 cagcaccacccgactgacatccccttccaacctatataggcacctgtgctcatgcacaca 422
|||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 292 cagcaccaggggactgacatccccttccaacctatagaggcacctttgctcatgcacaca 233
Query: 423 cactt-aaaaaataaatcttaagaaacaaaaataataataataataataataaaagatcg 481
||||| ||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 232 cacttaaaaaaataaatcttaagaaac------------aataataataat-aaagatcg 186
Query: 482 gtggctgagtctaggttgctatggctaccaagacctgggct 522
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 gtggctgagtctaggttgctatggctaccaagacctgggct 145
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 923
Length adjustment: 10
Effective length of query: 512
Effective length of database: 913
Effective search space: 467456
Effective search space used: 467456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no083_i23.g1 MSMg01no083_i23.g1 CHROMAT_FILE:
MSMg01no083_i23.g1 PHD_FILE: MSMg01no083_i23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:19 2005
(398 letters)
>mm_chr4_150684135_150684932
Length = 798
Score = 754 bits (390), Expect = 0.0
Identities = 396/398 (99%)
Strand = Plus / Plus
Query: 1 cagacccattgaagcgtgggatttcatgccttcctgtcagcctgggagcccaagaggtgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagacccattgaagcgtgggatttcatgccttcctgtcagcctgggagcccaagaggtgg 260
Query: 61 tccctgcagcaggtgtcatttatcagggctgtgcagagagagaaccccatgcctgtgcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccctgcagcaggtgtcatttatcagggctgtgcagagagagaaccccatgcctgtgcct 320
Query: 121 gctgcctgtgagggaaaccatcaatcttcgtggcctcctcctcaccccagaatttgctca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctgcctgtgagggaaaccatcaatcttcgtggcctcctcctcaccccagaatttgctca 380
Query: 181 gggaaggagaggaggaaagtgaggaggccgggcttgtgcacctaggtctccgctctgctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggaaggagaggaggaaagtgaggaggccgggcttgtgcacctaggtctccgctctgctc 440
Query: 241 tgcaaacacagagggtggtgtaaggggagggagaagacagccatagaggagcctgctttt 300
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 441 tgcaaacacagagggtggtgtaaggggagggagaaggcagccatagaggagcctgctttt 500
Query: 301 ctgccaggaggcctcatgagcacgggctgagtgtttgcaggcgccagggttagaccttct 360
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 ctgccaggaggcctcatgagcacgggctgagtgtttgcaggcgctagggttagaccttct 560
Query: 361 tgggtgtgaccttggttttacaccagcatgtgaccttg 398
||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgggtgtgaccttggttttacaccagcatgtgaccttg 598
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 798
Length adjustment: 9
Effective length of query: 389
Effective length of database: 789
Effective search space: 306921
Effective search space used: 306921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
