BAC Information

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BAC

Clone NameMSMg01-084E20
Chromosome4 (Build37)
Map Location 148,496,192 - 148,496,698
singlet/doubletsinglet
Overlap genenone
Upstream gene2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2, Ubiad1, Frap1, Angptl7, Exosc10, LOC100043151, Srm, Masp2, Tardbp, Gm572, LOC100041733, LOC100041742, LOC100041755, Casz1, Pex14, LOC670864, Dffa
Downstream geneCort, Apitd1, LOC666774, Pgd, Kif1b, LOC100041794, Ube4b, Rbp7, LOC627985, Nmnat1, Lzic, Ctnnbip1, Clstn1, Pik3cd, D4Ertd429e, Slc25a33, Spsb1, H6pd, Gpr157, Slc2a5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084E20.T7 (MSMg01no084_e20.b1)MSMg01-084E20.TJ (MSMg01no084_e20.g1)
ACCAG304196AG304197
length690716
length of high quality
(start - end)
315 (45 - 359)506 (68 - 573)
definitionCHROMAT_FILE: MSMg01no084_e20.b1 PHD_FILE: MSMg01no084_e20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:18 2005CHROMAT_FILE: MSMg01no084_e20.g1 PHD_FILE: MSMg01no084_e20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGCAGAGGATCCGCG
GAATTCAGAAATCGGCCTGCTTCTGCCTCCCGAGGGCTGGGATTAAAGGT
GTGCACCACCATGCCTGTCTAGTCTCATGTTTTGTTGTTTTAAAGAATGA
CCATATGGTGACATTGGAGAGTTGTGGCTTGTTTTCTTTTCTTTTCATAT
CCCCCCTTTGATAGAGTCTTTTTATATAGCCCTGGCTGTCCTGCTGTTCT
AGAACTCACTAGGTAAACAAAGCTCACCTTGAACTCTTCCTTTAGAATGC
TGGGGTTGAGATGTTGCCACCACTCATTCATATATATATATATATATATA
TATATATATAACCCAATTTTACACCCCCCCCCTTTTTCTCTCCTTTTTTT
TTTCTCTTTTCTCTTTCCCTTTCTGTTTCCGGCTTTTTCTTTTTTTTTTT
AAATCCCCTTTTCCGGTTTGCCATTTTTTTTTTATTTTTAAAGGGGTTAA
AACCCCCCTTTTGTTTTCAAAACTTTTTTTCCCCCCTTTCCCCCCTTCTT
TTTTTTTCCTCCCCTCTTTTTTTTCCCCCTTTTTGGAAAACAACCCCTCT
AAAACAAGTCTATACTTTCGTTTTCGTTCTTCTTTTATTTTTTCTCCCCC
CTCTTTTTATTATAAACACAACGGTGGTTTCGATTATCCT
TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTCCCCAGCACTTAGACATCTGATGCCAAATAC
TGGAATTAGAATGGATGAATCAAAGCTCTCCAGGTCTCGTTGATACTGGC
CACACTTTGACGATACACATACTGGACTACAGAAAGCTATGCCCTAAACT
GGATGTGATGGGGCACACCTTTAATCCCAGCACTCAGGAGACAGCAGCAG
GAGGATCTCTTCTGGTTTGAGGCCAACCTGGTCTACACAGTAAATTCCAA
GACAGCCAGGCTATGTAGAGACCAGGTCTCAAAAACCAACCAACCAACCA
ACAAAAAGGTGTTCTCTAAGAAATCATGCCCAGATCCTAAAGCCAGGAAG
GCACCTCTTTCCCTTTTACTGGTTTTTCATTTATTTATGTGTGTAGTTTA
TGTACCTGTGGGTCATGGTGTAGTAGCATATGCGAGCACACTAGGTCAGA
GGTTAATGCGATTTCTTTTTTTTTTTTTTTAAAGATTTATTTATTATATG
CAAGTACACTGTAGCTGTCTTCAGACACACCATAAGAAGGAGTCAGTTCT
TGTTACAGATGGTTGTGACCCACCATGTGGTTGCTGGCATTTGAACTCTG
AACCTTTTGGAAAGCATTCGGGTGCCCTTACCCACTGAGCCTCCTCCCCA
GTCCGTTAATGTTATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_e20.g1 MSMg01no084_e20.g1 CHROMAT_FILE:
MSMg01no084_e20.g1 PHD_FILE: MSMg01no084_e20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:18 2005
         (506 letters)



>mm_chr4_148495992_148496897
          Length = 906

 Score =  957 bits (495), Expect = 0.0
 Identities = 504/507 (99%), Gaps = 1/507 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctccccagcacttagacatctgatgccaaatactggaattagaatggatgaatcaaagct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctccccagcacttagacatctgatgccaaatactggaattagaatggatgaatcaaagct 260

                                                                       
Query: 61  ctccaggtctcgttgatactggccacactttgacgatacacatactggactacagaaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctccaggtctcgttgatactggccacactttgacgatacacatactggactacagaaagc 320

                                                                       
Query: 121 tatgccctaaactggatgtgatggggcacacctttaatcccagcactcaggagacagcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatgccctaaactggatgtgatggggcacacctttaatcccagcactcaggagacagcag 380

                                                                       
Query: 181 caggaggatctcttctggtttgaggccaacctggtctacacagtaaattccaagacagcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caggaggatctcttctggtttgaggccaacctggtctacacagtaaattccaagacagcc 440

                                                                       
Query: 241 aggctatgtagagaccaggtctcaaaaaccaaccaaccaaccaacaaaaaggtgttctct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggctatgtagagaccaggtctcaaaaaccaaccaaccaaccaacaaaaaggtgttctct 500

                                                                       
Query: 301 aagaaatcatgcccagatcctaaagccaggaaggcacctctttcccttttactggttttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagaaatcatgcccagatcctaaagccaggaaggcacctctttcccttttactggttttt 560

                                                                       
Query: 361 catttatttatgtgtgtagtttatgtacctgtgggtcatggtgtagtagcatatgcgagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 catttatttatgtgtgtagtttatgtacctgtgggtcatggtgtagtagcatatgcgagc 620

                                                                       
Query: 421 acactaggtcagaggttaatgcgatttcttttttttttttttt-aaagatttatttatta 479
           ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct: 621 acactaggtcagaggttaatgggatttcttttttttttttttttaaagatttatttatta 680

                                      
Query: 480 tatgcaagtacactgtagctgtcttca 506
           |||| ||||||||||||||||||||||
Sbjct: 681 tatgtaagtacactgtagctgtcttca 707


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space:   444416
Effective search space used:   444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)