MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-085F04
Chromosome	17 (Build37)	4 (Build37)
Map Location	88,542,956 - 88,543,157	15,747,821 - 15,748,110
singlet/doublet	singlet	singlet
Overlap gene	none
Upstream gene	Mcfd2, Ttc7, 1700011E24Rik, Calm2, LOC100043727, Tacstd1, Msh2, Kcnk12, LOC626888, LOC668863, EG626920, Msh6, Fbxo11, EG225058
Downstream gene	Foxn2, Ccdc128, LOC668866, Gtf2a1lf, Lhcgr, LOC668867, Fshr
Link	Open Mouse BAC browser

Click to get alignment info.

name	Mcfd2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:193813 MGI:2183439
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Ttc7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:225049 MGI:1920999
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1700011E24Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75467 MGI:1922717
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 13 ESTs, 1 Protein

name	Calm2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12314 MGI:103250
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043727 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043727
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Tacstd1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17075 MGI:106653
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Msh2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17685 MGI:101816
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Kcnk12 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:210741 MGI:2684043
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC626888 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:626888
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	LOC668863 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668863
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 ESTs, 2 Proteins pseudo : _no_value

name	EG626920 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:626920 MGI:3644888
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 52 ESTs, 3 Proteins

name	Msh6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17688 MGI:1343961
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Fbxo11 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:225055 MGI:2147134
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG225058 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:225058 MGI:3648524
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 83 ESTs, 7 Proteins

name	Foxn2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14236 MGI:1347478
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ccdc128 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73825 MGI:1921075
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC668866 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668866
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	Gtf2a1lf (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71828 MGI:1919078
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Lhcgr (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16867 MGI:96783
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC668867 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668867
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	Fshr (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14309 MGI:95583
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mcfd2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142378259 GeneID:193813 MGI:2183439
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : multiple coagulation factor deficiency 2 transcript_id : NM_176808.3

name	Mcfd2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118129996 GeneID:193813 MGI:2183439
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : multiple coagulation factor deficiency 2 transcript_id : NM_139295.2

name	Ttc7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142380644 GeneID:225049 MGI:1920999
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tetratricopeptide repeat domain 7 transcript_id : NM_028639.2

name	1700011E24Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94402175 GeneID:75467 MGI:1922717
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 12 ESTs, 1 Protein product : RIKEN cDNA 1700011E24 gene, transcript variant 2 transcript_id : XM_128789.5

name	1700011E24Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149268939 GeneID:75467 MGI:1922717
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 1 Protein product : RIKEN cDNA 1700011E24 gene, transcript variant 1 transcript_id : XM_001481211.1

name	Calm2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:46518512 GeneID:12314 MGI:103250
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : calmodulin 2 transcript_id : NM_007589.4

name	LOC100043727 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149268834 GeneID:100043727
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100043727 transcript_id : XM_001480831.1

name	Tacstd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:112293274 GeneID:17075 MGI:106653
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tumor-associated calcium signal transducer 1 transcript_id : NM_008532.2

name	Msh2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130707 GeneID:17685 MGI:101816
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mutS homolog 2 (E. coli) transcript_id : NM_008628.2

name	Kcnk12 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40445392 GeneID:210741 MGI:2684043
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : potassium channel, subfamily K, member 12 transcript_id : NM_199251.1

name	EG626920 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149268837 GeneID:626920 MGI:3644888
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 52 ESTs, 3 Proteins product : predicted gene, EG626920 transcript_id : XM_891536.3

name	Msh6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6754743 GeneID:17688 MGI:1343961
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mutS homolog 6 (E. coli) transcript_id : NM_010830.1

name	Fbxo11 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124486643 GeneID:225055 MGI:2147134
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : F-box protein 11 transcript_id : NM_001081034.1

name	EG225058 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149268941 GeneID:225058 MGI:3648524
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 82 ESTs, 7 Proteins product : predicted gene, EG225058 transcript_id : XM_140116.6

name	Foxn2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803567 GeneID:14236 MGI:1347478
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : forkhead box N2 transcript_id : NM_180974.2

name	Ccdc128 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803232 GeneID:73825 MGI:1921075
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : coiled-coil domain containing 128 transcript_id : NM_028658.3

name	Gtf2a1lf (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:12963758 GeneID:71828 MGI:1919078
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : general transcription factor II A, 1-like factor transcript_id : NM_023630.1

name	Lhcgr (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118129900 GeneID:16867 MGI:96783
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : luteinizing hormone/choriogonadotropin receptor transcript_id : NM_013582.2

name	Fshr (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31980788 GeneID:14309 MGI:95583
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : follicle stimulating hormone receptor transcript_id : NM_013523.2

name	Mcfd2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21314834 CCDS:CCDS29015.1 GeneID:193813 MGI:2183439
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0005576 - extracellular region [Evidence ISS] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0019752 - carboxylic acid metabolism [Evidence ISS]; GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IEA]; GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : neural stem cell derived neuronal survival protein product : multiple coagulation factor deficiency 2 protein_id : NP_647456.1

name	Mcfd2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28827786 CCDS:CCDS29015.1 GeneID:193813 MGI:2183439
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0005576 - extracellular region [Evidence ISS] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0019752 - carboxylic acid metabolism [Evidence ISS]; GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IEA]; GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : neural stem cell derived neuronal survival protein product : multiple coagulation factor deficiency 2 protein_id : NP_789778.1

name	Ttc7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30842800 CCDS:CCDS29016.1 GeneID:225049 MGI:1920999
definition	GO_function : GO:0005488 - binding [Evidence IEA] GO_process : GO:0030097 - hemopoiesis [Evidence IMP]; GO:0006879 - iron ion homeostasis [Evidence IMP] codon_start : 1 product : tetratricopeptide repeat domain 7 protein_id : NP_082915.1

name	1700011E24Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149268940 GeneID:75467 MGI:1922717
definition	codon_start : 1 product : hypothetical protein LOC75467 isoform 1 protein_id : XP_001481261.1

name	1700011E24Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94402176 GeneID:75467 MGI:1922717
definition	codon_start : 1 product : hypothetical protein LOC75467 isoform 2 protein_id : XP_128789.3

name	Calm2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680832 GeneID:12314 MGI:103250
definition	GO_function : GO:0005509 - calcium ion binding [Evidence TAS] GO_process : GO:0007049 - cell cycle [Evidence IDA] codon_start : 1 product : calmodulin 2 protein_id : NP_031615.1

name	LOC100043727 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149268835 GeneID:100043727
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001480881.1

name	Tacstd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:112293275 CCDS:CCDS29018.1 GeneID:17075 MGI:106653
definition	GO_component : GO:0005886 - plasma membrane [Evidence IEA] GO_process : GO:0006952 - defense response [Evidence IEA] codon_start : 1 note : panepithelial glycoprotein 314; Trop-1 protein; lymphocyte antigen 74 product : tumor-associated calcium signal transducer 1 protein_id : NP_032558.2

name	Msh2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678938 CCDS:CCDS29019.1 GeneID:17685 MGI:101816
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] [Evidence ISS] [Evidence IC] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATPase activity [Evidence IMP]; GO:0019237 - centromeric DNA binding [Evidence IDA]; GO:0003684 - damaged DNA binding [Evidence IMP]; GO:0003677 - DNA binding [Evidence IMP]; GO:0004422 - hypoxanthine phosphoribosyltransferase activity [Evidence IDA]; GO:0030983 - mismatched DNA binding [Evidence IMP]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0006915 - apoptosis [Evidence IMP] [Evidence IGI]; GO:0030183 - B cell differentiation [Evidence IMP]; GO:0019724 - B cell mediated immunity [Evidence IMP]; GO:0007049 - cell cycle [Evidence IEA]; GO:0007050 - cell cycle arrest [Evidence IMP]; GO:0006928 - cell motility [Evidence IMP]; GO:0008340 - determination of adult life span [Evidence IMP]; GO:0006259 - DNA metabolism [Evidence IEA]; GO:0006281 - DNA repair [Evidence IMP]; GO:0001701 - embryonic development (sensu Mammalia) [Evidence IGI]; GO:0031573 - intra-S DNA damage checkpoint [Evidence IGI]; GO:0045190 - isotype switching [Evidence IMP]; GO:0006298 - mismatch repair [Evidence IDA] [Evidence IMP]; GO:0045910 - negative regulation of DNA recombination [Evidence IMP]; GO:0043524 - negative regulation of neuron apoptosis [Evidence IMP]; GO:0006119 - oxidative phosphorylation [Evidence IMP]; GO:0006301 - postreplication repair [Evidence ISS] [Evidence IMP]; GO:0006164 - purine nucleotide biosynthesis [Evidence IDA]; GO:0006974 - response to DNA damage stimulus [Evidence IMP]; GO:0010224 - response to UV-B [Evidence IMP]; GO:0010165 - response to X-ray [Evidence IMP]; GO:0016446 - somatic hypermutation of immunoglobulin genes [Evidence IMP] [Evidence IGI]; GO:0016447 - somatic recombination of immunoglobulin gene segments [Evidence IMP] [Evidence IGI] codon_start : 1 product : mutS homolog 2 protein_id : NP_032654.1

name	Kcnk12 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40445393 CCDS:CCDS29020.1 GeneID:210741 MGI:2684043
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005267 - potassium channel activity [Evidence IEA] GO_process : GO:0006813 - potassium ion transport [Evidence IEA] codon_start : 1 product : potassium channel, subfamily K, member 12 protein_id : NP_954859.1

name	EG626920 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149268838 GeneID:626920 MGI:3644888
definition	codon_start : 1 product : hypothetical protein protein_id : XP_896629.2

name	Msh6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754744 CCDS:CCDS29021.1 GeneID:17688 MGI:1343961
definition	GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0003684 - damaged DNA binding [Evidence IGI] [Evidence IMP]; GO:0003677 - DNA binding [Evidence IMP] [Evidence IGI]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0008340 - determination of adult life span [Evidence IMP]; GO:0006259 - DNA metabolism [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0008629 - induction of apoptosis by intracellular signals [Evidence IMP]; GO:0006298 - mismatch repair [Evidence IMP] [Evidence IGI]; GO:0045910 - negative regulation of DNA recombination [Evidence IMP]; GO:0006974 - response to DNA damage stimulus [Evidence IEA]; GO:0009411 - response to UV [Evidence IMP]; GO:0006299 - short patch mismatch repair system [Evidence IMP]; GO:0016446 - somatic hypermutation of immunoglobulin genes [Evidence IMP]; GO:0016447 - somatic recombination of immunoglobulin gene segments [Evidence IMP] codon_start : 1 product : mutS homolog 6 protein_id : NP_034960.1

name	Fbxo11 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124486644 GeneID:225055 MGI:2147134
definition	GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0004842 - ubiquitin-protein ligase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 note : F-box only protein 11; GENA 104; jeff product : F-box protein 11 protein_id : NP_001074503.1

name	EG225058 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:20901382 GeneID:225058 MGI:3648524
definition	codon_start : 1 product : hypothetical protein protein_id : XP_140116.1

name	Foxn2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30725849 CCDS:CCDS29022.1 GeneID:14236 MGI:1347478
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : forkhead homolog 19; forkhead box N1 product : forkhead box N2 protein_id : NP_851305.1

name	Ccdc128 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31541801 CCDS:CCDS29023.1 GeneID:73825 MGI:1921075
definition	codon_start : 1 exception : mismatches in translation product : RIKEN cDNA 1110018J12 protein_id : NP_082934.2

name	Gtf2a1lf (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:12963759 CCDS:CCDS29024.1 GeneID:71828 MGI:1919078
definition	GO_function : GO:0003677 - DNA binding [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation note : TfIIa-alpha/beta-like factor; general transcription factor IIA, 1-like factor product : general transcription factor II A, 1-like factor protein_id : NP_076119.1

name	Lhcgr (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7305233 CCDS:CCDS29025.1 GeneID:16867 MGI:96783
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004964 - lutropin-choriogonadotropic hormone receptor activity [Evidence TAS]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : luteinizing hormone receptor product : luteinizing hormone/choriogonadotropin receptor protein_id : NP_038610.1

name	Fshr (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31980789 CCDS:CCDS29026.1 GeneID:14309 MGI:95583
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 exception : mismatches in translation note : follicle-stimulating hormone receptor; follitropin receptor product : follicle stimulating hormone receptor precursor protein_id : NP_038551.2

name	LOC626888 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:626888
definition	number : 1 pseudo : _no_value

name	LOC668866 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668866
definition	number : 3 pseudo : _no_value

name	LOC668866 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668866
definition	number : 2 pseudo : _no_value

name	LOC668866 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668866
definition	number : 1 pseudo : _no_value

name	LOC668867 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668867
definition	number : 1 pseudo : _no_value

name	LOC668863 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149268836 GeneID:668863
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 ESTs, 2 Proteins product : similar to ribosomal protein pseudo : _no_value transcript_id : XR_034864.1

clone name	MSMg01-061B02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-409H03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-327E14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-474F18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-439L06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-159G12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-273K13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-363O02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-535H19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-311K19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-170F20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-414C13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-296I13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-296I13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-520M06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-373P21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-424N03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-131B24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-537L16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-525E16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-087N21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-113P13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-105P04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-330A17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-091K09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-523O10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-532H20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-319E21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-383L05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-384E16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-163D21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-451C23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-485F05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-277G07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-268O09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-277G06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-370J13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-395G17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-405B11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-437P05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-518O08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-085F04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-062P07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-480N17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-472K09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-069B01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-326O08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-424A22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-198C02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-415N12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-070P06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-074J10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-403E18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-485L19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-133D18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-380F12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-106K10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-302F05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-446M24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-454F08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-170H22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-347A04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-362E22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-145D23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-352J04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-526O18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-544I14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-165N09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-322P20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-349H11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-480J10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-087D01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-305I20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-305J20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-305J18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-479L12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-131E07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-185B14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-109K12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-327K24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-175H08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-096K01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-172J03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-152G07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-217D02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-278E19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-435H02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-378J10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-058D18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-040E21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-051L11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-326O15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-204D02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-340P13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-327A20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-049E18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-181M05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-009L21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-183P19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-191F09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-255K14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-110M09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-144N17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-141B23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-275G03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-102O16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-076H09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-133O03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-285J07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-203G09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-123I22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-011B15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-220F23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-248G19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-254G21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-329C05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-020L24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-069G06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-257H14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-204F21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-128P04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-246F05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122J10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-012I19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-136C02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-296J24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-081G04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-052E24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-068O24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-193H08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-056L01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-063N17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-219G03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-223K15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-056O21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-096F05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-271A19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-187H07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-159I22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-009D11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-221J09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-026B07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-011A14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-215B15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-045B06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-236F24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-124D23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-259J10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-308N14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-015C05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-144K09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-006L07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-334K03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-346B05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-006K23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-194K07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-330I06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-118H11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-178N02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-273J19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-098G15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-060H13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-119J15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-157L19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-040C05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-340I22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-335A09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-022N04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-208G10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-191I23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-025J04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-312C21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-130E02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-335E02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-103E01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-319K20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-171F18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-035I04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-060H06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-298O08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-017G18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-345L09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-339P24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-195H20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-284J19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-105B18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-337P08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-276K24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-278G18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-088K20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-268A16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-191J19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-133O10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-148H05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-157J05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-007K14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-292B18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-113M10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-168A14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-210G18
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-085F04.T7 (MSMg01no085_f04.b1)	MSMg01-085F04.TJ (MSMg01no085_f04.g1)
ACC	AG304945	AG304946
length	1,329	1,349
length of high quality (start - end)	203 (68 - 270)	294 (65 - 358)
definition	CHROMAT_FILE: MSMg01no085_f04.b1 PHD_FILE: MSMg01no085_f04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:35:57 2005	CHROMAT_FILE: MSMg01no085_f04.g1 PHD_FILE: MSMg01no085_f04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:35:57 2005
singlet/doublet	singlet	singlet
BLAST hit	unique	plural
Map location.	(88,542,956 - 88,543,157)	(15,747,821 - 15,748,110)
sequence	TATGGGCGCATAGACTCACTAAGGGAGAGGATCCGCGGAATTCCCACATT TTAGTCATGGTTTTCATTTGCCTACTTCCTGTACAGCTCTCTGGGGCAGC CTTTTAAAGGGTCGGCTATTACAGAAACTAGCTCCTCTCTGGGTTAGGAG TCTTCTCTGGATCCTATTCCTTGTTAGTTGGGACTGAGAGATGACAAGAG GCCAAGTGTTTATAATGTAACAAGATCAGCGATGAATGCCATTTCCACCA GGGTTTTTGGGATGGTTTGGTGGTTTGTATTATATTTTTTTTTTTCTGTT TTCCTCCTTTTGTTTTTTTTTTTTCTTTCTTTGTTTGCTCTTCCTTTCTT TCTCTTTCCCTTTCTCCTTTCTTTTCCTTTCTCTTTTTCATTTTTTTTTT TTTTTTTCTCCACTTTTTCCTTTTTTTTTCTATTTTTCTCTCCTTTCTTT TTTTTTTCTCCTCTTTCTTTTTTTTTTTATTTTTTCCCTTTTTTCTTTTT TTCTTTTCTTTTACTTTTCTTTCCTTTATATTTTTCCTTTCTTTCTATTC CTTCTGTTTTATCTTTTTTCTTTTCTTTTTTTTCTTTCTTTATTTTTTTT TTTTCTTCTTTTTCTCTTTTTTTTTCTTTTTTTTTTCACTCTTATTTTTT CTTTTTTTCTTTTTTCCCCTTTTCTTTTTTTTTTCTCTTTTTTTTTTTCT TTCTCTCTTTTTTTTTTTTTTTTTTTTATTTTCTTTTTTCTTTTATTTCT TATTTTTTTCTCTTTTCTTCTTTTCTAATTTGTTTTTCTCATCCTCTTTT TTCTTTTTCTTCTTTCCTTATTCCTTTCTTTCTTTGCTTTTTTTTTCTTC TTTTTTTTTTTTCCCTTTTTCTTCTTTTATTTCCTCATTTTTTTTTTTTT CTTTTTTTTTCTTTTTTTTCTTTTTTCTATCTTTACTTTTCTTTCTTCTT TTTTTCTTTTCTCTTTTTTTTTTTTCTTTTTTTTCTTTTTTATTTTCTTT TTTTTTTCTTCTTTCTTCTCTTATTTTCTTCTTTTTTTTTTTTTTTTCTC TATTTTTTTTTTCTTTTTTTTTTCTTTTCTTTTTTTTCTTTTCTTTTTTA TCTCTCTTTCTTCTTATTTTTTTTATTTTCTCTTTAATCTTTACTTCCTT TTCTTTTTTTTCTTTCTTTTTTCCATCTTTTTTTTTTTCCTTCTTATTTT TTTTTTTTTTTTTTATCTTTTCTCCTATTTTTTTTTATCTTCCTTCCTTC ATCTTTATTCCTATCTTCTTCTTTTTTTCTTTTTATTTTTTCTTCTCTAT TCTGTTTCTTTTTTTTTTTCTTCTTTTTT	NNTTCCACACGGAGCCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXCCTTTGAATCCCAGACCCACGTCAGTGGAGGAGGTA ACGACCCTATTGGACCCACTGTTTGGTATCACGAAACTTTAGAATGGCTT AAGCCAGAAAAGAGAAGAGATGAGCACAGGAGACGCCCCGATCACCCTGA ATTTAACCCCACCACACTGTATGTGCCTGAAGAGTTCCTCAATTCTTGTA CCCCAGGGATGAGGAAGTGGTGGCAGCTCAAGTCTCAGAACTTTGACCTC GTCATCTTTTATAAGGTGGGGAAGTTTTATGAGTTGTATCACATGTATGC TGTTATTGTAGTCTGTGAGCTCGTGCTGATATTCATGACTGGCAATTTTT TTTCCATTCTGGTCTTCCACATATTGTGTTTGTTCGTATTCTCGGAATTC CTTGTTGTATAAGGCCTTATTATTACCTTCGCATTGTTCTATTACTCCAT ATTCCTTTAACTGATTTTTTCTTCTTTAGGATTTAATTTTTTTCTCTCCT TTTCTTTCTTTTTTTTTTTTTTCTTTTATTCTTTTATACTTTTCTTTTTT TATCTTCTTACCTTCTTCTCTCTTTTTATCTCCATTCGTTTTTTCTTTTT TCTTTTTTCTTCTTTTTTTTTTTCCTCTTTCTTTTTTTTCTTTCCTCTTT TTTTTCTTTTTTTTCTTTTTCTTTTCTCTTTTTTTTTTTTATTCCTTTTT TTCTTTTTTCTTTTTTTTTTTTTTTTGTCCCTTTTTTTTTCTATTTTTTT TTATTTTCTTTTTCCTCCTTCTTTCCTCTTTTCTTTTTTCTTTCTTCTCT CTTCTCTTTCTTCCTCTTTTTCTCTTCTTATTCTTTTTCTTCCTTTTTTT TTCTCTTATATCTTTTTTTTTCTTCTTATTCCTTTATTTTTACTTTTCTT TTTCCTCTTTTTCTTCTCTTTTTTTCTTTTTTCTCTTCTCTTTCCTTTTT TTTCCCATCTCTTTTTCTTTCGCTTTTTTTTTTCCTCTCTCCTCTCCTTT CTCCTTTTCTTCTCTTTTTTCTTTCTCTTTTTCTTCTTCCTCATTTTTAA TACTTTTTCTCTCTTCTTTCTTTTTTTTACCTTCTTTCTATCTTTTTTTT TACTCTCCTTTCTTTTTTTATTTTTTTCTCTCCCCCACCTTTTTTTTTAC TTTCTTTAATTTTTTACTTTAATAATTTTTTTCTTTTGATATATATACTC ACTTCGCTTCTTACCTGCTTTTCCTTATCTCTCATTCTTCTTTTCTTCTT CTCCTCCTCTCCTCTCTTTCTTTTGCTCTACTTTCTTTATTCCTTCTTT
quality values	Open. Hide. 7 7 7 10 14 14 15 14 8 8 8 8 8 12 12 20 24 19 12 8 8 8 22 22 53 53 53 50 50 50 48 48 42 42 43 43 43 42 47 47 53 57 47 47 47 42 36 36 50 53 41 33 33 31 31 29 21 15 9 9 9 9 12 11 11 11 11 19 22 30 32 34 33 37 39 47 53 57 50 35 35 35 37 35 35 50 50 50 36 36 44 44 39 37 41 41 41 34 24 16 12 12 12 11 18 24 32 37 32 12 10 7 6 8 8 8 9 13 22 30 37 37 39 43 43 48 48 48 39 39 35 35 39 40 43 50 50 50 50 42 42 36 32 32 42 42 48 41 32 28 20 20 30 39 54 54 48 57 57 54 54 54 57 57 57 57 57 57 57 57 57 48 48 47 46 44 43 43 43 46 46 43 43 43 43 44 41 28 27 36 36 47 34 36 23 20 20 32 41 43 43 43 32 32 23 28 28 35 39 32 32 15 15 15 32 32 36 36 44 31 31 33 35 35 42 40 32 18 14 14 14 32 28 41 28 27 20 22 22 20 20 28 34 37 39 30 24 23 18 14 14 21 21 25 37 40 43 42 39 35 35 33 40 32 30 28 33 26 18 13 15 15 17 20 26 28 17 10 10 13 11 10 10 8 8 10 7 8 12 12 20 14 14 13 11 15 10 10 8 10 13 10 10 10 8 8 6 6 8 8 10 11 11 13 13 9 8 8 8 8 12 10 11 10 10 10 8 8 8 8 8 8 11 12 10 10 8 8 8 8 8 8 11 11 15 13 16 12 10 12 12 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 12 10 8 8 8 10 7 7 8 8 8 8 9 9 9 9 10 12 12 18 13 10 7 7 8 8 17 12 12 18 19 25 19 13 9 9 9 9 10 12 10 11 8 8 6 6 8 10 11 8 8 6 6 13 15 20 17 13 10 10 10 10 9 9 10 13 14 9 11 8 8 8 8 8 8 8 9 8 8 13 8 8 12 9 10 8 10 8 8 8 8 8 13 8 8 8 8 8 9 9 12 15 18 22 24 24 24 20 22 9 9 8 15 13 15 9 9 8 10 9 10 12 12 22 8 8 8 15 13 16 19 15 13 11 10 10 10 8 11 9 9 12 10 10 10 10 10 10 10 11 8 8 8 8 8 8 8 8 6 6 8 8 8 8 10 10 8 8 8 8 10 13 8 8 8 8 8 8 6 6 10 8 8 8 8 8 8 8 8 8 8 6 8 8 10 8 10 10 10 8 15 13 10 8 8 10 7 9 13 10 11 11 17 10 10 10 10 15 8 8 8 8 8 6 6 10 12 28 24 15 10 10 10 16 10 10 9 8 8 8 10 10 9 9 9 9 6 7 8 10 9 9 10 15 13 12 8 8 8 8 10 10 9 9 13 13 10 8 6 6 6 7 10 8 9 9 9 9 9 11 19 11 12 21 21 12 12 10 10 10 10 10 10 12 21 21 12 11 11 10 10 17 12 11 8 6 6 10 8 10 10 13 10 8 8 8 8 8 10 11 8 10 8 8 9 10 14 15 10 10 10 10 9 9 9 9 8 10 7 9 12 12 17 12 11 11 10 16 9 8 8 21 23 13 13 10 12 10 8 6 6 8 8 9 10 13 19 17 10 9 9 9 10 13 12 10 9 9 11 10 8 9 9 9 8 8 11 13 13 13 8 8 8 10 10 10 10 9 10 10 14 14 10 9 9 9 8 8 8 8 8 10 9 9 9 9 9 16 16 16 18 11 11 12 16 10 9 9 8 10 8 15 11 10 9 9 9 8 8 8 8 10 6 6 8 10 8 8 8 10 12 12 9 10 10 10 10 12 20 15 15 19 16 20 18 18 8 8 6 6 10 12 17 17 17 10 10 10 10 8 8 9 9 10 12 11 19 8 8 12 10 8 8 8 8 8 8 8 10 14 13 10 13 13 10 10 9 10 8 8 8 8 10 10 10 10 8 7 7 8 10 15 20 26 22 15 14 10 10 16 16 20 16 24 16 15 11 11 11 17 9 10 10 12 13 16 13 14 13 15 11 14 18 15 17 11 10 9 9 9 9 9 9 9 12 8 8 8 10 8 8 8 8 8 10 8 8 10 8 8 8 8 9 9 10 15 18 14 14 12 10 8 8 8 8 9 10 18 14 9 9 9 10 10 15 15 8 9 9 14 12 9 9 10 10 8 8 8 13 17 13 12 9 9 10 12 10 7 6 8 8 8 10 19 11 11 11 11 8 8 8 10 13 10 10 11 9 9 8 10 10 10 12 13 13 18 10 10 8 15 8 8 8 8 8 8 10 10 15 15 19 20 20 20 17 18 19 17 15 15 11 8 8 8 8 13 11 17 17 22 18 13 10 8 8 8 12 10 14 18 18 16 13 10 11 10 10 11 10 10 9 9 10 7 8 8 8 8 8 15 10 9 8 8 8 8 8 8 8 9 9 9 8 8 6 7 8 8 8 8 8 10 8 8 6 6 8 6 6 7 10 11 19 10 10 8 8 8 8 13 15 15 9 9 8 8 6 6 8 8 8 8 8 6 6 8 8 8 10 9 9 12 10 10 6 6 8 8 10 17 17 10 10 10 10 12 8 6 6 8 8 10 13 9 9 9 8 8 11 17 12 12 9 10 10 12 16 16 16 12 11 11 11 9 9 8 8 8 8 13 12 13 12 10 9 9 9 9 13 15 12 12 16 13 12 6 6 8 8 11 13 12 12 8 8 8 8 8 13 8 9 9 10 10 16 12 18 10 9 9 12 12 12 9 10 11 13 13 9 9 8 8 10 10 15 17 12 9 8 8 7 6 6 6 10 8 8 8 8 8 8 8 10 15 21 18 11 11 11 12 11 11 13 12 12 8 8 8 10 10 10 17 11 11 10 10 8 8 10 8 8 8 6 6 8 8 9 17 10 10 13 10 10 10 16 15 18 19 12 12 7 6 8 8 8 8 13 20 19 19 14	Open. Hide. 0 0 3 6 6 6 7 7 6 6 6 8 10 10 8 8 6 6 6 7 11 15 15 11 8 8 3 0 3 15 16 17 10 10 10 21 21 33 32 32 35 24 21 9 9 9 23 22 42 42 42 38 57 47 47 41 44 39 50 47 23 23 10 9 10 12 16 16 14 19 15 26 26 34 34 28 30 30 37 39 48 48 36 34 35 37 37 33 33 28 28 28 32 47 47 48 48 48 40 46 46 43 34 21 17 10 10 10 10 10 13 21 26 37 39 43 36 31 28 24 22 22 28 27 43 48 48 48 48 57 57 59 48 48 48 48 48 43 42 42 32 32 39 43 46 54 54 47 48 48 47 46 42 43 43 43 43 47 47 57 57 59 57 57 57 48 44 47 44 44 57 57 47 48 48 57 48 54 54 57 57 48 48 48 48 54 57 59 59 57 57 57 48 48 48 50 57 57 57 57 57 57 57 57 57 52 52 52 57 52 52 52 52 52 52 57 38 41 20 20 20 38 38 52 52 52 52 43 59 50 38 38 13 14 14 38 38 57 57 52 52 52 57 57 57 57 57 57 57 57 57 43 57 43 43 43 52 52 52 57 52 52 52 52 57 43 39 39 43 43 43 32 35 35 38 42 42 32 32 20 20 20 43 43 43 36 29 27 43 38 38 41 59 59 57 57 52 52 57 52 52 52 52 52 47 57 57 57 57 57 57 47 43 43 43 50 47 44 42 31 31 35 42 42 43 39 41 41 41 39 42 36 32 25 25 28 32 36 42 30 30 25 19 19 19 19 16 19 12 13 17 30 30 39 28 21 19 12 12 12 16 12 10 10 9 9 9 10 10 10 10 9 9 12 12 18 15 19 14 16 13 9 9 9 10 12 14 10 9 9 9 9 11 12 11 11 11 13 15 22 21 19 13 11 10 11 11 23 23 22 17 11 9 9 10 17 10 8 8 10 10 14 14 15 10 8 8 8 13 14 12 12 12 8 8 8 8 8 8 13 15 10 8 8 6 6 8 8 12 12 15 13 10 10 10 10 10 8 8 8 8 8 8 8 8 10 8 8 8 8 8 8 8 8 6 6 8 8 8 8 8 7 7 8 10 10 9 11 12 10 10 10 19 17 12 10 8 9 8 10 10 10 10 10 10 13 15 8 8 8 8 8 8 8 8 13 10 10 10 10 11 9 8 8 8 8 10 10 8 6 6 9 11 11 10 10 10 15 10 10 10 8 8 9 9 13 9 9 9 7 10 8 8 7 7 10 6 6 8 13 13 12 11 10 10 10 8 8 8 9 9 9 15 13 11 11 9 7 10 8 9 9 10 8 8 6 6 8 8 9 10 10 9 11 11 9 8 8 14 12 9 8 8 10 10 8 8 8 8 8 8 7 6 8 8 9 9 17 10 10 10 10 10 11 9 9 8 8 8 8 8 8 8 8 8 6 6 8 8 12 12 10 10 10 9 9 9 9 8 8 6 6 8 8 10 10 16 10 11 12 10 8 9 10 10 10 12 11 15 11 8 8 6 6 8 8 8 8 10 10 10 10 8 12 10 10 10 8 8 8 8 8 8 8 8 8 8 8 10 17 15 14 13 13 9 9 10 10 9 9 10 19 10 12 13 21 15 10 12 13 8 8 8 10 8 8 8 13 10 15 16 12 14 12 16 19 12 12 10 8 8 8 10 8 9 12 14 11 11 11 10 10 11 9 10 10 8 10 6 6 8 8 12 15 10 8 8 8 10 10 12 10 10 10 10 8 8 8 10 11 6 6 8 10 8 10 10 10 10 11 10 9 8 8 12 10 12 10 10 10 8 10 6 6 8 8 12 12 21 10 10 8 6 6 7 6 8 6 6 8 8 8 8 9 9 12 13 13 12 10 10 8 8 8 8 12 19 15 12 11 9 9 9 10 10 10 8 10 8 8 8 8 10 10 10 11 10 10 9 7 8 8 9 8 8 10 14 14 12 16 11 8 8 6 6 8 8 12 11 8 8 8 8 8 8 10 8 8 8 8 10 8 8 8 8 9 12 13 14 11 11 11 7 6 8 8 8 8 8 8 6 8 8 8 9 9 10 8 8 8 8 6 6 8 8 9 8 8 8 8 8 9 9 8 8 6 7 13 13 13 8 6 6 6 10 8 9 9 9 12 15 15 10 8 8 10 10 10 8 6 8 7 6 8 8 8 8 10 8 9 13 10 10 8 12 8 8 9 10 10 8 8 6 6 8 8 8 8 8 10 10 12 10 8 8 8 10 8 8 9 8 11 6 6 8 8 6 6 6 6 8 8 10 7 6 6 6 8 8 11 10 10 10 9 9 10 12 13 15 9 8 8 7 6 8 11 11 14 11 11 8 12 8 6 6 8 6 6 8 8 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 10 8 10 10 9 9 8 8 8 7 6 10 8 8 8 9 10 8 8 10 8 8 10 10 8 8 8 8 8 8 8 8 8 8 8 6 6 8 8 12 10 8 13 10 10 8 10 8 8 8 8 8 8 10 11 11 11 15 12 9 9 9 9 8 8 8 8 8 8 8 12 12 8 8 8 10 9 9 9 15 11 13 13 13 11 8 8 9 8 8 8 8 10 10 10 10 10 10 9 9 12 13 8 8 8 8 10 8 11 11 8 8 8 6 6 6 8 17 10 7 6 6 6 6 8 10 11 16 30 34 19 17 8 8 8 8 10 8 10 10 11 8 8 8 8 8 10 26 19 8 7 7 13 15 11 8 8 6 6 8 8 8 8 17 8 8 6 7 8 15 13 8 8 8 8 10 9 9 10 9 8 8 6 8 8 8 9 10 10 8 8 8 8 7 8 9 10 9 6 8 6 6 8 8 8 8 8 8 8 8 9 8 8 8 8 7 7 6 8 6 10 10 9 9 9 9 9 9 10 9 9 9 10 10 8 8 6 6 8 8 12 10 10 10 8 8 8 8 8 8 8 8 10 6 6 8 8 13 10 10 8 8 8 8 6 6 8 8 8 10 10 10 10 8 8 8 8 9 11 11 12 12 18 14

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no085_f04.b1 MSMg01no085_f04.b1 CHROMAT_FILE:
MSMg01no085_f04.b1 PHD_FILE: MSMg01no085_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:35:57 2005
         (203 letters)



>mm_chr17_88542755_88543357
          Length = 603

 Score =  329 bits (170), Expect = 8e-95
 Identities = 194/202 (96%)
 Strand = Plus / Minus

                                                                       
Query: 2   tgcctacttcctgtacagctctctggggcagccttttaaagggtcggctattacagaaac 61
           ||||||||||||||||||||||||||||||||||  |||||||| || | ||||||||||
Sbjct: 403 tgcctacttcctgtacagctctctggggcagcctaataaagggtgggttgttacagaaac 344

                                                                       
Query: 62  tagctcctctctgggttaggagtcttctctggatcctattccttgttagttgggactgag 121
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 tagttcctctctgggttaggagtcttctctggatcctattccttgttagttgggactgag 284

                                                                       
Query: 122 agatgacaagaggccaagtgtttataatgtaacaagatcagcgatgaatgccatttccac 181
           |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 283 agatgacaagaggccaagtgtttagaatgtaacaagatcagcgatgaatgctatttccac 224

                                 
Query: 182 cagggtttttgggatggtttgg 203
           ||||||||||||||||||||||
Sbjct: 223 cagggtttttgggatggtttgg 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 203
Length of database: 603
Length adjustment: 8
Effective length of query: 195
Effective length of database: 595
Effective search space:   116025
Effective search space used:   116025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no085_f04.g1 MSMg01no085_f04.g1 CHROMAT_FILE:
MSMg01no085_f04.g1 PHD_FILE: MSMg01no085_f04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:35:57 2005
         (294 letters)



>mm_chr4_15747617_15748310
          Length = 694

 Score =  429 bits (222), Expect = e-125
 Identities = 273/290 (94%)
 Strand = Plus / Minus

                                                                       
Query: 5   tgaatcccagacccacgtcagtggaggaggtaacgaccctattggacccactgtttggta 64
           ||||||| |||||||| ||||||||||||||||||||  || |||||||||| |||||||
Sbjct: 494 tgaatccaagacccacatcagtggaggaggtaacgacagtagtggacccactatttggta 435

                                                                       
Query: 65  tcacgaaactttagaatggcttaagccagaaaagagaagagatgagcacaggagacgccc 124
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tcacaaaactttagaatggcttaagccagaaaagagaagagatgagcacaggagacgccc 375

                                                                       
Query: 125 cgatcaccctgaatttaaccccaccacactgtatgtgcctgaagagttcctcaattcttg 184
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 cgatcaccctgaatttaatcccaccacactgtatgtgcctgaagagttcctcaattcttg 315

                                                                       
Query: 185 taccccagggatgaggaagtggtggcagctcaagtctcagaactttgacctcgtcatctt 244
           ||| |||||||||||||| ||||||||| ||||||||||||||||||| || ||||||||
Sbjct: 314 tactccagggatgaggaactggtggcagttcaagtctcagaactttgatcttgtcatctt 255

                                                             
Query: 245 ttataaggtggggaagttttatgagttgtatcacatgtatgctgttattg 294
           |||||||||||||||||||||||| |||||||| ||| ||| ||||||||
Sbjct: 254 ttataaggtggggaagttttatgaattgtatcatatggatgttgttattg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information