BAC Information

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BAC

Clone NameMSMg01-085P06
Chromosome4 (Build37)
Map Location 27,424,928 - 27,425,517
singlet/doubletsinglet
Overlap genenone
Upstream geneGng2-ps1
Downstream geneLOC100040691, Tpm3-rs2, LOC100040842, LOC100040735, LOC230044, LOC665141
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-085P06.T7 (MSMg01no085_p06.b1)MSMg01-085P06.TJ (MSMg01no085_p06.g1)
ACCAG305393AG305394
length1,2871,289
length of high quality
(start - end)
603 (30 - 632)333 (75 - 407)
definitionCHROMAT_FILE: MSMg01no085_p06.b1 PHD_FILE: MSMg01no085_p06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:37:26 2005CHROMAT_FILE: MSMg01no085_p06.g1 PHD_FILE: MSMg01no085_p06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:37:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTGGGACATTGGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAA
TTCTAGTAATACAATTTTACCATGAAATTCATTTATGCTTTCAGATTTTA
GCTCTTAGTCCGTCAAACTTGTTTGCTTTGCTCACTAAAAAAAATTGTAA
AATAGCACATTAGAAAAATATTATTACTAACTTTAAGCAGAGAAAGTACA
ATTCAGCTGAGAAGAGATTTAGGGCACAGAGCACATAGCTGATGGATTTC
CCCGCTGTCCCTGGATAGCAAGGACAGGAACACCAGATTCCTACCCCCAA
GCCATCTGGTTAATTTTGGATAGAATCTGCTCTGTGACTCTGCATTCTGG
AGCACATTACCTCCTCAGCTTTTGCGACCCAAAACTTACATTTTCCAGCT
CTACCTTTTATTCGTGTGCATCAATTTAATGATATCACTAGGGTCTTTAA
TATACAAGAGTTTGAACAGTCTATATATGACACTGTAGCCCTACTCATTT
CTGACTTTACAATTTTTATATAGTGAACATCAATTGCTCATCTACCTAAT
TATAAAATGCAGTTGTTTTCACAGCATACTTTTTCATGCACTAGTACTGC
GCTCCTTATACTCTTGTGCCTTAGGAATACATTTTCCACAGGTTGGGACC
GCACAAGAAGTGATCAACTGGCCACGCACAATTAAAGGGCTTATAGTCTC
AAATCATTTTTCTCCGGATTTCTATTGATTTTACCAAGTTTAAGGCTTCG
TTTGAAATGCACGTTTTAATGTTTCATAATATCTGAATTTCTTTTGCCCT
CTCTTTCTGATATATATTGCTTTCCTCTTACATTTCCTTGGCTTTGTAAA
CATTGGTTATTGTTTTTCTCTTTGTTGCTTTGCTTTACTTGTTTATTTTC
CTTGGCTCCTTTCTAATTCTTCCTTCTCTTTCACTTATTATTTTTTTCTC
CTCTTGGCTTTTCTATATTGTATTCACATGTGCTCTTTTTTATCCTTACT
TTCTGTTCTTTAACCTATATTCTCTTTTTCTGATATCTCCCCATTTCTCC
TTCCATCTACTTCTTTTCATTCTATCTTTTCTCTCTCGGCTACTCTATCT
CCTCTTCACCACTATTTACTTCTCTTCCTCTTTTTGGTCTTCACTTTATC
TCTCTTATTCTCCCTCCTCTCTTAATCTCCCTTATTCTATCCTGATACTC
CTCATTCTACTCATCTTCCTCCTCATAGCTNTCCCTCATGTTCATTGTCA
TTCGCTATCTCTTATGTCTTCTATTCTCTCCTAATAA
TTTTTTTTAGCAAGTGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGA
GAAGCACCTGACCAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAA
TCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAAC
ACTCCTCCATTTTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAAT
CAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCA
GCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAA
AGAATTATGCTCCCCTATGCTCATAGCAGCCTTATTTATAATAGCCAGAA
GCTGGAAAGAACCCAGATGCCCCTCAACAGAGGGCTGGATACAGAAAATG
TGGTACATCTACACAATGGAGTACTACTCAGCTATCAAAAAGAATGAATT
TATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCACCATCCAGAGTG
AGGTAACACATTCTCAAAGGAACTCACACAATATGTACCCACTGATAAGT
GGATACTAGCCCAAAACCTAGGATACCCAAGATATAAGATACACTTTCCT
AAATACATGAAACTCAAGATAACCTGAAGACTGATGTGTGGACACTAATG
CTCACTCCTTAAAAGTTGGTACTAATACACCTTTGTTAAGTATTTACCGA
GACTAAATTTTGTATTCTGATAGTAATTGATGTTCCTCCTTATAATCTTG
CTTTTATTCTATTTATTCTTTCTCTTTAATCTTTTATCTTTTACTTTTTT
ACTTCTTTTGCTTTTTTCTATCCATATTTTTTTCTCCTATGTTCTCTAAA
TTGTATCTTGTTTTCTCTGATTTTATTACTCCCTTTATTCTTATACATAC
CATAATTTTCGTTTTATTTCCTATCTTCTTCAATATGGTTGTATCTTCTT
TGTACTTCTCTCTTTATATTTTCTTTTTTATTTTTCTTCCCCTCCCCCGT
TTTTTTANTAATATTATGTTATTTATTATTAAGTGATTTATTTGATTATT
TTTAATGTTTANTGTTTTATTTTATAAAATTATGATATATTTGTTATAGA
ATATATATTATGATTGATATAAATTTATTAATTTATTAGATTTATTTTAG
TAATAGTGTTATTGTAATTTTTATAATTTATATTATTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no085_p06.b1 MSMg01no085_p06.b1 CHROMAT_FILE:
MSMg01no085_p06.b1 PHD_FILE: MSMg01no085_p06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:37:26 2005
         (603 letters)



>mm_chr4_27424711_27425717
          Length = 1007

 Score =  994 bits (514), Expect = 0.0
 Identities = 570/590 (96%), Gaps = 4/590 (0%)
 Strand = Plus / Minus

                                                                       
Query: 18  ggaattct-agtaatacaattttaccatgaaattcatttatgctttcagattttagctct 76
           |||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 807 ggaattctaagtaatacaattttaaaatgaaattcatttatgctttcagattttagctct 748

                                                                       
Query: 77  tagtccgtcaaacttgtttgctttgctcactaaaaaaaa---ttgtaaaatagcacatta 133
           ||||  |||||||||||||||||||||||||||||||||   ||||||||||||||||||
Sbjct: 747 tagtaagtcaaacttgtttgctttgctcactaaaaaaaaactttgtaaaatagcacatta 688

                                                                       
Query: 134 gaaaaatattattactaactttaagcagagaaagtacaattcagctgagaagagatttag 193
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 687 gaaaaatattattactaactttaagcagagaaagtacagttcagctgagaagagatttag 628

                                                                       
Query: 194 ggcacagagcacatagctgatggatttccccgctgtccctggatagcaaggacaggaaca 253
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 ggcacagagcacatagctgatggatttccccgctgtccctggatagcaaggacaggaaca 568

                                                                       
Query: 254 ccagattcctacccccaagccatctggttaattttggatagaatctgctctgtgactctg 313
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ccagattcctacccccaagccatctggttaattttggatagaatctgctctgtgactctg 508

                                                                       
Query: 314 cattctggagcacattacctcctcagcttttgcgacccaaaacttacattttccagctct 373
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 507 cattctggagcacattacctcctcagcttttgtgacccaaaacttacattttccagctct 448

                                                                       
Query: 374 accttttattcgtgtgcatcaatttaatgatatcactagggtctttaatatacaagagtt 433
           ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 accatttatttgtgtgcatcaatttaatgatatcactagggtctttaatatacaagagtt 388

                                                                       
Query: 434 tgaacagtctatatatgacactgtagccctactcatttctgactttacaatttttatata 493
           |||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||
Sbjct: 387 tgaacagtctatatatgaaaatgtagtcctactcatttctgactttacaatttttatata 328

                                                                       
Query: 494 gtgaacatcaattgctcatctacctaattataaaatgcagttgttttcacagcatacttt 553
           |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 327 gtgaacattaattgctcatctacctaattataaaatgcggttgttttcacagcatacttt 268

                                                             
Query: 554 ttcatgcactagtactgcgctccttatactcttgtgccttaggaatacat 603
           ||||||||||||||||||  | ||||||||||||||||||||||||||||
Sbjct: 267 ttcatgcactagtactgcatttcttatactcttgtgccttaggaatacat 218


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1007
Length adjustment: 10
Effective length of query: 593
Effective length of database: 997
Effective search space:   591221
Effective search space used:   591221
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)