BAC Information

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BAC

Clone NameMSMg01-086A24
Chromosome4 (Build37)
Map Location 27,350,085 - 27,350,422
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665079, Gng2-ps1
Downstream geneLOC100040691, Tpm3-rs2, LOC100040842, LOC100040735, LOC230044
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-086A24.T7 (MSMg01no086_a24.b1)MSMg01-086A24.TJ (MSMg01no086_a24.g1)
ACCAG305474AG305475
length700798
length of high quality
(start - end)
444 (33 - 476)---
definitionCHROMAT_FILE: MSMg01no086_a24.b1 PHD_FILE: MSMg01no086_a24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:37:38 2005CHROMAT_FILE: MSMg01no086_a24.g1 PHD_FILE: MSMg01no086_a24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:37:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGCGGCGCTATACGACTCCTATATTCAGAGAATCCGCGGAATTCCTGACT
TGATCTCTCTATCTGATGGAGATAAAATGTAATGATGGACTAAACTCTTT
CCTTCTCAATTTATTGCCTTTCCATAGCAATAGGTAGTAAATAAGAATAA
CTTGTAATGAAAATCCTTGACTCAGCAATCTCTCTGTCTCTGCCTCTCTC
TATCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTCTCTCTCTTTCTC
TCTGTAAATAGAAAGTATAAAATTGAGAAAAGTGATCAGCAGGAGGGAGA
GGGTGACCAGCTAGGGTAAGTGAGGGTGACTAGTTCAAACTATATGTTCT
ATATGTGAGAAAGGGTTATAGGGAAACATTATTAGTAGTGTAAGACTACT
CAAAATTATTCTTAAAATTTTAAGATAATCTGAGTAAAATAAGAATTTAA
CATTTTTGTATTTAATTACTAATTATGCATTAGATTAATTAATAATTAAG
AATCTTATTGTAATATTTTTTGTCTTTTCAGTTAGTAGTACTGTGTTTAT
AAATAGTATGTGTTTTCCTTTGATTCTCATTTACTGTTATTTACTGATGT
GGAATTTTCTTTTATATTGTAACTTTCTGATTTTTATTGTGTTTATCTTN
TATTTGAATATCTTTCACTAGCTTTCGTGTTTCTATACTTGATTCCTTTT

GGGTGGCGGGGTGGGGGGGCGNNGTTTGCGGGCCGCGGCCTTGTTCGGGG
CGCTCTTTCCCCCCACCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCATCTGTT
GTGGATACCTTCATGAAACTTTCACTAGATCAGTTTTTAACCCCAGCAAG
GAAGGATTCTTGAGGTTTTATTACTAGCAGAGATATTATTTTAAACTGAT
GCGGTTTGTGGGAGGAAGAGTCATATTTTTTTCATATACACTGATGGATA
GCCATTCCACAGGGACGTAAAACCGCCGTAGTGAGACAATTGGACCAATG
TTGCACCCAGTGTTTTAAAAATACTAAGATGTGTGTGTTGGAGCGGCTAT
GGGAGGGGAGGTGTGTGGAGGAGAGGGGTGAGGGGTATTGATCAGAGGGC
GGCTTATATTTTTCTTGCATATCGGTTTTGTGCCGGTGTGTGTGTCAGAG
GTAGGCTAGTGTCTTTTCTCTTTCACACCGCGGATAGCCATTTTGACAGC
GGATCTAAACACCTTTTCCGCTCCTGGATTTTCCCATAAATATTATTACT
TTCAATTTTCCTAACATCTTCATTTTCCCATTTACTTCGTGGTTTGATTC
TTTTTGAGTAATTTTTTGGGTTTTATGTGTTTTTTCTGTGGGAGGGGGGA
AAGACTGGTGGAATTTTTGCTGGGATGTTGCGTTTGGTGACCGTGGGGTG
GTGTCTTTGGGGGAATGTTGCCGTTCTGTGCCTGGGTGGTTGCTACGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no086_a24.b1 MSMg01no086_a24.b1 CHROMAT_FILE:
MSMg01no086_a24.b1 PHD_FILE: MSMg01no086_a24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:37:38 2005
         (444 letters)



>mm_chr4_27349664_27350507
          Length = 844

 Score =  565 bits (292), Expect = e-165
 Identities = 334/360 (92%), Gaps = 22/360 (6%)
 Strand = Plus / Minus

                                                                       
Query: 63  ctctttccttctcaatttattgcctttccatagcaataggtagtaaataagaataacttg 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 ctctttccttctcaatttattgcctttccatagcaataggtagtaaataagaataacttg 700

                                                                       
Query: 123 taatgaaaatccttgactcagcaatctctctgtctctgcctctctctatctctgtctctg 182
           |||||||||||||||| |||||||||||||||||||||          ||||||||| ||
Sbjct: 699 taatgaaaatccttgaatcagcaatctctctgtctctg----------tctctgtctttg 650

                                                                       
Query: 183 tctctgtctctgtctctgtctctctctctctttctctctgtaaatagaaagtataaaatt 242
           ||||||  ||||  ||||||| ||        ||||||||||||||||||||||||||||
Sbjct: 649 tctctg--tctg--tctgtctgtc--------tctctctgtaaatagaaagtataaaatt 602

                                                                       
Query: 243 gagaaaagtgatcagcaggagggagagggtgaccagctagggtaagtgagggtgactagt 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gagaaaagtgatcagcaggagggagagggtgaccagctagggtaagtgagggtgactagt 542

                                                                       
Query: 303 tcaaactatatgttctatatgtgagaaagggttatagggaaacattattagtagtgtaag 362
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tcaaactatatgttctacatgtgagaaagggttatagggaaacattattagtagtgtaag 482

                                                                       
Query: 363 actactcaaaattattcttaaaattttaagataatctgagtaaaataagaatttaacatt 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 actactcaaaattattcttaaaattttaagataatctgagtaaaataagaatttaacatt 422


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space:   361956
Effective search space used:   361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)