BAC Information

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BAC

Clone NameMSMg01-086D11
Chromosome4 (Build37)
Map Location 77,447,884 - 77,535,652
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC667862
Downstream geneLOC100039974, LOC100039996
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-086D11.T7 (MSMg01no086_d11.b1)MSMg01-086D11.TJ (MSMg01no086_d11.g1)
ACCAG305590AG305591
length701709
length of high quality
(start - end)
203 (68 - 270)289 (73 - 361)
definitionCHROMAT_FILE: MSMg01no086_d11.b1 PHD_FILE: MSMg01no086_d11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:37:52 2005CHROMAT_FILE: MSMg01no086_d11.g1 PHD_FILE: MSMg01no086_d11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:37:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,535,450 - 77,535,652)(77,447,884 - 77,448,172)
sequence
GCGGCCGCTAAACGACTCACTNATCGTGACGGGGCGCGGAATTCTTGGTA
TTTCCAAGAGATGCATCTGTAATATAATTGGAATCCTTGAACTCGAACTT
GGCAAATGGGCCTCACTCATTAGCAGTGGCTGTTCCACACTGTGTGAATA
TTACAACCGGCAACCTGCTATTAAGTTTAAGGCTTTGGAAGATACAAACT
TATACATATTTAAGAGCGTGAACAGTTACTTCATTTCCCTGGTTACCAGT
CTATTGAGAATTATCAGAGGGGTAAAAAAATACTATAAAAATAACAAAAG
AAGTATGTACGGTCGCTTAACAAGGATGAAATATAACTTCATGAGATTTG
TTTTTATTACCCCCCCCCCCCACTGTAGGTCCTCCAATTTTAAAGGGCAA
ACTTAGACTGCCATTTACCATATTTTGCACATATTCTGGAACACTTGGAA
GTGCTGCTATCTGTCTGATGTTGTGGATCATTGCACCTCTCCATGTAGGC
CCTCTCTTGCCCTCCTTGCCTTGAAATTCTGTCATAGGACATGACACCTG
TTCTAAGGGAGCCTTCCGCTATGAAAGGTCTTTTGGAAATGCCCTATTCC
CATGTTTCCTATATTCCCTCATCTACAACTCCCCTATTCTGCTTCTCTGT
TTTATTTTGTCACATTGTTTCCTACTCCCCTTTTTAGGCCCTATATCGCC
C
CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAACTGTATGTATTCTATCCAGAGAACAC
TCTTCAGTTGACAGTTTATTACACACCAGTCACCCATCAAAGAGAACATG
TAGGCTAGACTCAGGAGCTGTTAGTAAACACATAGATTTTGAATGAGATG
TGATAGGTTTGATATTTTTATGAGGATAAGACTTAGAAAACACACACAAA
TATGGTTTTGAACACTCGACATTTTAGAGAATGAAATATAACAGCCTTTC
TGAATTCTCTGTTAAAACCTTTATTATAAAAATTACATTTGTGGCTAATA
TAGACTTTTATTCTAATACCCCTCCCCCCAAAGTGCTACTTAATTCAAAA
GATTATCTGTAGTAGAATTTTAAAAGATTTGTTTTATTATTTCTTTCTGT
GTACACATATGTATGTATATTGGTACTCTTCGAAGTCAAACAGTATATCA
GAAATTTCTAGAGTTGGAGTTACAGATAGTTGTGAACTGCCTCACCATAG
CTGCTGGGAATGAAATCCAAGTCTTTTTCAAGATCAGCAACTCATCTTAA
GCATGTAGTCATTTCTCCAACCCCTATTTGCAGTAATTTTCCCCCTTTCT
AAACTGTATTTTTGCACACTAATTTTTGATCGAAAAACTACCATGCTTTA
ACATGTTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no086_d11.b1 MSMg01no086_d11.b1 CHROMAT_FILE:
MSMg01no086_d11.b1 PHD_FILE: MSMg01no086_d11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:37:52 2005
         (203 letters)



>mm_chr4_77535250_77535852
          Length = 603

 Score =  369 bits (191), Expect = e-107
 Identities = 200/203 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtaatataattggaatccttgaactcgaacttggcaaatgggcctcactcattagcagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 tgtaatataattggaatccttgaactcgaacttggcaaatgggcctcactcattagcagt 344

                                                                       
Query: 61  ggctgttccacactgtgtgaatattacaaccggcaacctgctattaagtttaaggctttg 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct: 343 ggctgttccacactgtgtgaatattagaaccggcaacctgctattaagtttaaggttttg 284

                                                                       
Query: 121 gaagatacaaacttatacatatttaagagcgtgaacagttacttcatttccctggttacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 283 gaagatacaaacttatacatatttaagagcgtgaacagttacttcatttccctggctacc 224

                                  
Query: 181 agtctattgagaattatcagagg 203
           |||||||||||||||||||||||
Sbjct: 223 agtctattgagaattatcagagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 203
Length of database: 603
Length adjustment: 8
Effective length of query: 195
Effective length of database: 595
Effective search space:   116025
Effective search space used:   116025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no086_d11.g1 MSMg01no086_d11.g1 CHROMAT_FILE:
MSMg01no086_d11.g1 PHD_FILE: MSMg01no086_d11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:37:52 2005
         (289 letters)



>mm_chr4_77447684_77448372
          Length = 689

 Score =  520 bits (269), Expect = e-152
 Identities = 284/289 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aactgtatgtattctatccagagaacactcttcagttgacagtttattacacaccagtca 60
           |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 201 aactgtatgtattctatccagagaacactcttcagttggcagtttattagacaccagtca 260

                                                                       
Query: 61  cccatcaaagagaacatgtaggctagactcaggagctgttagtaaacacatagattttga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccatcaaagagaacatgtaggctagactcaggagctgttagtaaacacatagattttga 320

                                                                       
Query: 121 atgagatgtgataggtttgatatttttatgaggataagacttagaaaacacacacaaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgagatgtgataggtttgatatttttatgaggataagacttagaaaacacacacaaata 380

                                                                       
Query: 181 tggttttgaacactcgacattttagagaatgaaatataacagcctttctgaattctctgt 240
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggttttgaacacttgacattttagagaatgaaatataacagcctttctgaattctctgt 440

                                                            
Query: 241 taaaacctttattataaaaattacatttgtggctaatatagacttttat 289
           |||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaaaccaatattataaaaattacatttgtggctaatatagacttttat 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)