Query= MSMg01no086_f19.b1 MSMg01no086_f19.b1 CHROMAT_FILE:
MSMg01no086_f19.b1 PHD_FILE: MSMg01no086_f19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:05 2005
(287 letters)
>mm_chr4_150117084_150117771
Length = 688
Score = 484 bits (250), Expect = e-141
Identities = 277/286 (96%), Gaps = 1/286 (0%)
Strand = Plus / Minus
Query: 1 caatgtttccaattttcctcctcctccctctcctcctcctcttcctcttttcccccttac 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 540 caatgtttccaattttcctcctcctccctctcctcctcctcttcctcttttcttccttac 481
Query: 61 tacccctattttgttttgtgcaggggatggaacccagcacctaatacatggtcagcatgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tacccctattttgttttgtgcaggggatggaacccagcacctaatacatggtcagcatgt 421
Query: 121 cctctgccacaaagctatacctgctcagcaccccagcactctcattccacagagctacac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 cctctgccacaaagctatacctgctcagcaccccagcactctcattccacagagctacac 361
Query: 181 acccacagcacacgctctcacagaccccgcccccagcacgcaagctcttacagaccccgc 240
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 acccccagcacaggctctcacagaccccgcccccagcacgcaagctcttacagaccccgc 301
Query: 241 cccctagcatattctctcacagaccccgccccccagcat-tccacg 285
||||||||| | |||| ||||||||||||||||||||| ||||||
Sbjct: 300 cccctagcacacactcttacagaccccgccccccagcatatccacg 255
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 688
Length adjustment: 9
Effective length of query: 278
Effective length of database: 679
Effective search space: 188762
Effective search space used: 188762
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no086_f19.g1 MSMg01no086_f19.g1 CHROMAT_FILE:
MSMg01no086_f19.g1 PHD_FILE: MSMg01no086_f19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:05 2005
(288 letters)
>mm_chr4_149935915_149936602
Length = 688
Score = 526 bits (272), Expect = e-154
Identities = 284/288 (98%)
Strand = Plus / Plus
Query: 1 tttaggctcagcactaaactgctttgagcatgtggtccagcacccctcacccatagcctg 60
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 tttaggctcagcactaaactgctttgagcatgtggtccagcacccctcagtcatagcctg 260
Query: 61 agttgtcatatctttagcccatatagccttatatcaggacatgaaactggacaatatttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agttgtcatatctttagcccatatagccttatatcaggacatgaaactggacaatatttc 320
Query: 121 tctgaataaaatgtgcattcaggtttgcctcaggggatatgtatggagagagggttctgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctgaataaaatgtgcattcaggtttgcctcaggggatatgtatggagagagggttctgg 380
Query: 181 gaaaatggctcttgcagaggactggtatgtttggagcacccacatggcggtccataacca 240
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 381 gaaaatggctcttgcagaggactgggatgtttggagcacccacatggtggtccataacca 440
Query: 241 tggaccccagtgtcttccgagctctcctggcacatgtaggcaaagcat 288
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggaccccagtgtcttccgagctctcctggcacatgtaggcaaagcat 488
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space: 189441
Effective search space used: 189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
