Query= MSMg01no086_j04.b1 MSMg01no086_j04.b1 CHROMAT_FILE:
MSMg01no086_j04.b1 PHD_FILE: MSMg01no086_j04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:22 2005
(459 letters)
>mm_chr4_24718620_24719488
Length = 869
Score = 723 bits (374), Expect = 0.0
Identities = 436/460 (94%), Gaps = 10/460 (2%)
Strand = Plus / Minus
Query: 10 attcagaaagt-attcaataataaacacagttcttaacttgcatatctggcatttgatat 68
||||||||||| | | ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 669 attcagaaagtaactaaataataaacacagttcttaacttgcatatctggcatttgacat 610
Query: 69 ttgttttttaattttagaaacttattatttgggggctgaggagatgttcaagtggttaaa 128
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 609 ttgtttgttaattttagaaacttattatttgggggctgaggagatgtccaagtggttaaa 550
Query: 129 gtgcagccatacaagtgtgggtgggtactgggtggagctcagatggagtaaagtgaaagt 188
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 549 gtgcagccatacaagtgtgggtgggtactgggtggagctcagatggagtaaagggaaagt 490
Query: 189 aaagtggaagagaaattgaagaagattcctggcctcaacctcagatctccatat-atgtg 247
||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||
Sbjct: 489 aaagtggaagagaaattgaagaagattcctggcctcaacttcagatccccatattatgtg 430
Query: 248 cccatattcatgcagacatagaaacatacagcccacactgagatggaataagaacattat 307
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 429 cccatattcatgcagacatagaaacatacagcccacacagaggtggaataagaacattat 370
Query: 308 tattgtatgtgtgcatgtg--c-----c-tatatatgatgcaggcatgatgtgtgtgggt 359
||||||||||||||||||| | | |||||||||||||||||||||||||||||||
Sbjct: 369 tattgtatgtgtgcatgtgtgcatgtgcgtatatatgatgcaggcatgatgtgtgtgggt 310
Query: 360 gcacataccaaggtatgcatgtgaaggccagaaggcaactttgttgattctttccttcca 419
|||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 309 gcacataccaaggtattcatgtgaaagccagaagacaactttgttgattctttccttcca 250
Query: 420 tctacctttacatggggtctggagatcaaatccggttgcc 459
||||||||||||||||||||||||||||||||||| ||||
Sbjct: 249 tctacctttacatggggtctggagatcaaatccggctgcc 210
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 869
Length adjustment: 10
Effective length of query: 449
Effective length of database: 859
Effective search space: 385691
Effective search space used: 385691
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no086_j04.g1 MSMg01no086_j04.g1 CHROMAT_FILE:
MSMg01no086_j04.g1 PHD_FILE: MSMg01no086_j04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:22 2005
(173 letters)
>mm_chr4_24590618_24591187
Length = 570
Score = 308 bits (159), Expect = 2e-88
Identities = 169/173 (97%), Gaps = 3/173 (1%)
Strand = Plus / Plus
Query: 1 catccctgtggtttaagttgtgtggcttggtttgtttggccataaaggagtaagtacaca 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 catccctgtggtttaagttgtgtggctttgtttgtttggccataaaggagtaagtacaca 260
Query: 61 tacgtaaaaatcccaagagagaaagctacttgagtctaggtctttccgaagaatatttgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacgtaaaaatcccaagagagaaagctacttgagtctaggtctttccgaagaatatttgt 320
Query: 121 ttttcccccttgacttagatgtcacctttaaaaaataatttnggaattctcat 173
||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 321 ttttcccccttgacttagatgtcacctttaaaaaata-ttt--gaattctcat 370
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 173
Length of database: 570
Length adjustment: 8
Effective length of query: 165
Effective length of database: 562
Effective search space: 92730
Effective search space used: 92730
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
