BAC Information

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BAC

Clone NameMSMg01-087C20
Chromosome4 (Build37)
Map Location 83,870,673 - 83,927,804
singlet/doubletdoublet
Overlap geneBnc2
Upstream gene1810054D07Rik, Snapc3, Psip1, LOC100040611, 4930473A06Rik, LOC668010
Downstream geneLOC100040660, LOC624465, LOC100040284, D530005L17Rik, LOC622811, LOC100040303, Sh3gl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-087C20.T7 (MSMg01no087_c20.b1)MSMg01-087C20.TJ (MSMg01no087_c20.g1)
ACCAG306284AG306285
length714711
length of high quality
(start - end)		652 (63 - 714)634 (69 - 702)
definitionCHROMAT_FILE: MSMg01no087_c20.b1 PHD_FILE: MSMg01no087_c20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:11 2005CHROMAT_FILE: MSMg01no087_c20.g1 PHD_FILE: MSMg01no087_c20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,927,409 - 83,927,804)(83,870,673 - 83,871,306)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AATAGTCACCATTGTAGCAGCTCAGCTGAGAAGCAACTGAGAAGTAGGGC
CTGTAATCTTCTATTTCTGAGGATTTGAAGAGTGGGTATACATTTCTGTA
TGGAAATATTTTCCTAACCAATACTGCATTCACATCAGGCACATATACTT
TCTTAGATTTGATAAAAATCCCTTTTACTGCCTTCTCCCCTTTCCTCATG
CACATAGACAGCTGACACTTTATGTCCAGCAGTTCTGTACACGTGGATTC
AACCAACCACAGACAAAGAATGTTAAATGCACCCAACAGCATCCAACACA
TAGAAACATTCTTTATTGTCACTATTTCCTATATGATGTAGTACAACTAT
TTGTATATCATTTATGTCACATGGGAATCATATGTAATGACTTAATATAC
CATGTAGGATTGTTGAGTACCCTTGGAAATACTGTCAGCAGTTTATATAA
GGGACTTTTAAGAATCTGTGAATTTTGGTTGGGGGTTTATGCTGACCTAA
TCCTTCAATGATACCAAGGGATGACTGCTAACACACACACACACACACAC
ACACACACACACACACACACATCATCATCATCATCATCATCAATATCATC
ATTATCTCCTCCTCCTCCTGTAGACTATGATCATTTTAGACAGTATTGAG
AATATTTGGCATAC

AATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCCAGAACATCAGACACACCCGTGGTCAAAAGT
AAGTAGGGCCCACACCCAAGCCAAGGGTGTTGGGAACCCTAGCTCCTTTC
TGTTCACAGTTAGACACCGGCTCTGCCTTCTCTCTCTTTCCCCTTCCTGT
GCAATCTACTAATCTTGAAGAAAGAAAGTTATAAACGCCACACTCCCTCC
CTGAGGCAATCATGGGGGACTCTCTCCCATCCCACTCAATGGCATCTGAT
AGAGAGAAAGAAAGGAAACAGACAAAGAAGTGCTTGCTACTTTATTTAGG
TCCTTGGGGTCCTTGGTATTTCCTGATGCCAAATAATTTTGCTCTGCTGA
GATCTTAAGAGAACTGTCAAGGGTAGATGTGCTTTTTGAAGCTTGGCACT
CTATCAGGAATCAATTATTTGATCTCCCTTTTTGGATTCTTCCAGGGCAT
CTTCTTACCTACAACGGGTCCAGGTGACTGGTGGTTCAGAAGAAACCAAG
AAGGGCTACTGAGAAGTATAACTTCCCTCCTCTCCTCTGCTAGTGTGATA
AGGCTTATGGGACTATGGTGCGTTTCTTTTGGAAAATGAAATCTTCTAAG
GTCATAGACAGGGACATGTAACCTGATAGGGTTGGTGTATGCTGCAGATA
GGGACAATACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no087_c20.b1 MSMg01no087_c20.b1 CHROMAT_FILE:
MSMg01no087_c20.b1 PHD_FILE: MSMg01no087_c20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:11 2005
         (652 letters)



>mm_chr4_83927409_83928460
          Length = 1052

 Score =  758 bits (392), Expect = 0.0
 Identities = 395/396 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtagcagctcagctgagaagcaactgagaagtagggcctgtaatcttctatttctgagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tgtagcagctcagctgagaagcaactgagaagtagggcctgtaatcttctatttctgagg 337

                                                                       
Query: 61  atttgaagagtgggtatacatttctgtatggaaatattttcctaaccaatactgcattca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 atttgaagagtgggtatacatttctgtatggaaatattttcctaaccaatactgcattca 277

                                                                       
Query: 121 catcaggcacatatactttcttagatttgataaaaatcccttttactgccttctcccctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 catcaggcacatatactttcttagatttgataaaaatcccttttactgccttctcccctt 217

                                                                       
Query: 181 tcctcatgcacatagacagctgacactttatgtccagcagttctgtacacgtggattcaa 240
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 216 tcctcatgcacatagacagctgacacttcatgtccagcagttctgtacacgtggattcaa 157

                                                                       
Query: 241 ccaaccacagacaaagaatgttaaatgcacccaacagcatccaacacatagaaacattct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 ccaaccacagacaaagaatgttaaatgcacccaacagcatccaacacatagaaacattct 97

                                                                       
Query: 301 ttattgtcactatttcctatatgatgtagtacaactatttgtatatcatttatgtcacat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96  ttattgtcactatttcctatatgatgtagtacaactatttgtatatcatttatgtcacat 37

                                               
Query: 361 gggaatcatatgtaatgacttaatataccatgtagg 396
           ||||||||||||||||||||||||||||||||||||
Sbjct: 36  gggaatcatatgtaatgacttaatataccatgtagg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space:   668964
Effective search space used:   668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no087_c20.g1 MSMg01no087_c20.g1 CHROMAT_FILE:
MSMg01no087_c20.g1 PHD_FILE: MSMg01no087_c20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:12 2005
         (634 letters)



>mm_chr4_83870473_83871506
          Length = 1034

 Score = 1195 bits (618), Expect = 0.0
 Identities = 630/634 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccagaacatcagacacacccgtggtcaaaagtaagtagggcccacacccaagccaagggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccagaacatcagacacacccgtggtcaaaagtaagtagggcccacacccaagccaagggt 260

                                                                       
Query: 61  gttgggaaccctagctcctttctgttcacagttagacaccggctctgccttctctctctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttgggaaccctagctcctttctgttcacagttagacaccggctctgccttctctctctt 320

                                                                       
Query: 121 tccccttcctgtgcaatctactaatcttgaagaaagaaagttataaacgccacactccct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccccttcctgtgcaatctactaatcttgaagaaagaaagttataaacgccacactccct 380

                                                                       
Query: 181 ccctgaggcaatcatgggggactctctcccatcccactcaatggcatctgatagagagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccctgaggcaatcatgggggactctctcccatcccactcaatggcatctgatagagagaa 440

                                                                       
Query: 241 agaaaggaaacagacaaagaagtgcttgctactttatttaggtccttggggtccttggta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 agaaaggaaacagacaaagaagtgcttgctactttatttaggtccttggggtcattggta 500

                                                                       
Query: 301 tttcctgatgccaaataattttgctctgctgagatcttaagagaactgtcaagggtagat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttcctgatgccaaataattttgctctgctgagatcttaagagaactgtcaagggtagat 560

                                                                       
Query: 361 gtgctttttgaagcttggcactctatcaggaatcaattatttgatctccctttttggatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtgctttttgaagcttggcactctatcaggaatcaattatttgatctccctttttggatt 620

                                                                       
Query: 421 cttccagggcatcttcttacctacaacgggtccaggtgactggtggttcagaagaaacca 480
           |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 621 cttccagggcatcttcttacctacaatgggcccaggtgactggtggttcagaagaaacca 680

                                                                       
Query: 481 agaagggctactgagaagtataacttccctcctctcctctgctagtgtgataaggcttat 540
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 681 agaagggctactgagaagtataacttcccttctctcctctgctagtgtgataaggcttat 740

                                                                       
Query: 541 gggactatggtgcgtttcttttggaaaatgaaatcttctaaggtcatagacagggacatg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gggactatggtgcgtttcttttggaaaatgaaatcttctaaggtcatagacagggacatg 800

                                             
Query: 601 taacctgatagggttggtgtatgctgcagatagg 634
           ||||||||||||||||||||||||||||||||||
Sbjct: 801 taacctgatagggttggtgtatgctgcagatagg 834


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space:   638976
Effective search space used:   638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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