BAC Information

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BAC

Clone NameMSMg01-087F06
Chromosome4 (Build37)
Map Location 10,460,804 - 10,461,004
singlet/doubletsinglet
Overlap genenone
Upstream geneAsph, Gdf6, 4930448K20Rik, LOC666840
Downstream gene1700123O12Rik, LOC383991, LOC100039656, LOC545589, 2610301B20Rik, LOC383992, LOC100039746, Plekhf2, 2310030N02Rik, LOC546828, LOC666897, Trp53inp1, Ccne2, Ints8, Dpy19l4, Rbm35a, LOC634834, 1110037F02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-087F06.T7 (MSMg01no087_f06.b1)MSMg01-087F06.TJ (MSMg01no087_f06.g1)
ACCAG306392AG306393
length791852
length of high quality
(start - end)
205 (145 - 349)---
definitionCHROMAT_FILE: MSMg01no087_f06.b1 PHD_FILE: MSMg01no087_f06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:24 2005CHROMAT_FILE: MSMg01no087_f06.g1 PHD_FILE: MSMg01no087_f06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCCCTTTTGCTTNTTTTTCTTTTCTTTCCCCATTCCGCTTCCTCCTTT
CATACCTATCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCATTGCTGCCTTCTCCATAAGCCAAGGGCATGTTTCCT
GAACATAGACCATAGACCAAGAACTTATGAAGTTCGCAGTGTCTCCACTC
ATGTGACCTCCCAAATCATACCCAATATGCCATATTATGACTGTCTATCT
CTAGATACTGCTTTCCTTTATGCATTATGTTTTCCCTTCTCTTTCCCTTT
ATCAGCATGCCTATTACAGGACAGCTTTTATTTTTATTTTATTTTTTCAT
TACACATTCTCTTCATTTACATTTAAAGTGATATCCTCTTTCCTAGTTTC
CTCTCTAAAAATCCCCTATGCCCTCCTCCCTCCGCCTTCTCCCCAACCCA
CCCACTCCAGCTTCCTGGTCCTGTCATTTCCCTATACAGGCGTACAGTTC
GGCACATAATCTCTCTCCAGACTAAGGTCCTCTAGGACAGTTACTTTTAC
TTGACCCCTGTGTATTTCCCTGTACCCACGTGTCCCCTATTCCCCTTTGC
CCCTGTATGTCTAATTTCTGTTTACCGTGATTTACGTGAACTTTCTTGCT
CATCCCCTTTATCCACCTCCATATTCTCCTTACTACACTTCATACCCTTG
GTCCGCCAATTTGCACACCTCTTGATGTAACATCTCTTACCCTCCTGCAA
AATTCCTTGCCTGTCCTTTACCAAACCACTATTTAACATCA
CCTTTTTTCCCCCCCCNNNCNNTCCCCNTCCNNCTTTNNCTNNNTTATAA
AACATTTAAACTATGCAGTGTGTAGAXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTACGGATATAATCTA
AAAAACGAGAGAGAAAAAAGATTTTATTTTAGCTCCCAGACCTTGCAGAC
CTGCAAATCCATATATAATAGGGAGTTCTAGAACAGGGGAGAGAACATAA
AAATATTTGGTAGAAATAACAGTTCCTCAAACCTCTGTAATTTGAGTGAG
AATTAAGAAGTTCAGTGAACCTAAGATAGGGAAACTCAATAGCTCCATAT
CTACATATATTATAATCTAAACACTACCCATACCATATATTAATCATGTC
TTTGATTACATTACTACACGTACCGATTTATTTTTTTTTGGCCCACCCCC
CCCTGATTAATGATCACGTTTGTATTCAACAAGCTTTGGCTCGTCAATAA
AAAAAAAAAAAAATATTATGTTGTAGACTCGTTATTGAAAAATTGTCAAA
TTTCCTATGATCTACCATATTTTTACACATATTTTATATAACTCTCATAC
CTTTCTCAACGCACAGATTTCCACCTTTAACATAAACATCTTCCTCGAGT
TTAGCTATTTTAGAATACAACATTTGCGACTATTCATTTATTTACCTTAT
TCCCATGCGTACTTTATCCAATATTTTTTTTGTTGCCGCTTATTTTGTTA
ATTGCTTTCGTCCTTTTTCTGTTTTTACCTGCTCCCGCTTTTTTTTCCCC
CTTCTTTCCCCCTCCTTCTTACCTCCCTTATTTTTTTCGCTTTCTTTTTG
CT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no087_f06.b1 MSMg01no087_f06.b1 CHROMAT_FILE:
MSMg01no087_f06.b1 PHD_FILE: MSMg01no087_f06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:24 2005
         (205 letters)



>mm_chr4_10460630_10461232
          Length = 603

 Score =  315 bits (163), Expect = 1e-90
 Identities = 193/203 (95%), Gaps = 2/203 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttcctgaacatagaccatagaccaagaacttatgaagttcgcagtgtctccactcatgt 60
           |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 375 tttcctgaacatagaccaaagaccaagaacttatgaagtt-gcagtgtctccactcatgt 317

                                                                       
Query: 61  gacctcccaaatcatacccaatatgccatattatgactgtctatctctagatactgcttt 120
           ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 316 gacctcctaaatcatacccaatatgccatattatgactgtctatctctagatcctgtttt 257

                                                                       
Query: 121 cctttatgcattatgttttcccttctctttccctttatcagcatgcctattacaggacag 180
           |||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||| ||
Sbjct: 256 cctttatgcattatgttttctcttct-tttccctttattagcatgcctattacaggagag 198

                                  
Query: 181 cttttatttttattttatttttt 203
            ||||||||||||||||||||||
Sbjct: 197 tttttatttttattttatttttt 175


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 205
Length of database: 603
Length adjustment: 8
Effective length of query: 197
Effective length of database: 595
Effective search space:   117215
Effective search space used:   117215
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)