BAC Information

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BAC

Clone NameMSMg01-087K05
Chromosome4 (Build37)
Map Location 120,853,175 - 120,853,773
singlet/doubletsinglet
Overlap geneRlf
Upstream geneFoxo6, Scmh1, Slfnl1, Ctps, EG667063, Cited4, Kcnq4, Nfyc, Rims3, LOC626489, 3110037I16Rik, Zfp69, Smap1l, Col9a2, Zmpste24, Tmco2, LOC100042174
Downstream geneOTTMUSG00000008911, EG666914, LOC666921, LOC666927, LOC666931, LOC666937
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-087K05.T7 (MSMg01no087_k05.b1)MSMg01-087K05.TJ (MSMg01no087_k05.g1)
ACCAG306613AG306614
length694685
length of high quality
(start - end)
451 (70 - 520)607 (73 - 679)
definitionCHROMAT_FILE: MSMg01no087_k05.b1 PHD_FILE: MSMg01no087_k05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:50 2005CHROMAT_FILE: MSMg01no087_k05.g1 PHD_FILE: MSMg01no087_k05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATCTAGATAACAGGCACAACACTGTATGTTACCAGGATGCTAAGCA
AACCTGTAGTGCATTTTCTTGATTGATGTGGGAGGGCCCAGCTCACTCTG
GATGTTGCCACCCCTGGGCAGGTGGTCCTGGATTGTACAAGAAAGCAGGC
TAAGCAAGCCATGAGGAGCAAGGCAATAAGCAATGTTCCTTTATGCATTA
GAGGTTCTCAACTTAATATTGCAACCCTTTAATATATTTACTTCCTCATG
TGGTGATCCCCAACAGTAAAATTATTTTGTTGCTATTTCATAACTATAAT
TTTGCTACTGTTATAAGTTGTAATGTAAATATCTGATGTGCAAGATATCT
GATATGGGACCCCCAAAGGTGTCAAGATCCACAGGCTGAGAACCATTGCA
GGCAGATATATATATATGAGAGAAACACAACTTCCCAAGTTGCTTTGGTC
ATGGCATTTTATCACTGCAATAGAAACCATAACTAAGGTTCAGTGGGTCT
TGCTAGGTGGCCCATGCTGGCCTCACAATCACAATCCTTCTGCCTCAGGT
AGTAGGCAATCCAAGCATACCCTTTTAACCCCTTTACACCTCTCCCTTTT
ATGAGACAGGCTTCCCCTGGGTAACCCTGGTTGCCCTGGAAACC
CAATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACCTGGAGCTATAGTTACAGCTGTGAAC
CATCTCGTGTGAGTTCTGGGAATAGGATTTTGGTCCTCTTAAAGAGCAAT
ATGTACTCTTAACCACTGAACCATCTCCATCCCTACGAACTCCTTTTAAA
TTAATCCTTAAATGTGATTGTTTTCAGATGATAAAGGACAGATACTGTCA
ATAATTATTTAGTCTTCCTAACACCTATGGCTGGGGATGGCCTTAAAATT
GGCAAGTGTTGTACTGCTAAGCTGTTTGTTTATATGTATGCCACAGCAGA
GGACAGCTTTGTTAAGTATTGAAACACATGGATTACACAACTGTTGTTTT
ATTTTGCAGCGGTAGTCATGAACCAGTACCCTGGACGTGCAGGATAAATG
CTTTGTCGAGCTGCCTTTCCAGCCCCTAGATTTCCTTTCAACATATAAAT
ATATCGATAAGTAAATAAGAAATAAGTATCTGAGAAATATAGATACTTTT
TAAGAAAGGGAAAGAAGCTAGGCATGGTGGCACACACTTTAATCTCAGCT
CTCAAAAGCGGAGGCAGGTAGATTAACCTTATTTGAGCTAGACGCTCATC
TGTGTTAGCTGGCCAGCAGAGCTCTGGAGAGCTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no087_k05.g1 MSMg01no087_k05.g1 CHROMAT_FILE:
MSMg01no087_k05.g1 PHD_FILE: MSMg01no087_k05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:50 2005
         (607 letters)



>mm_chr4_120852976_120853982
          Length = 1007

 Score = 1127 bits (583), Expect = 0.0
 Identities = 595/599 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acctggagctatagttacagctgtgaaccatctcgtgtgagttctgggaataggattttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 acctggagctatagttacagctgtgaaccatctcgtgtgagttctgggaataggattttg 739

                                                                       
Query: 61  gtcctcttaaagagcaatatgtactcttaaccactgaaccatctccatccctacgaactc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 gtcctcttaaagagcaatatgtactcttaaccactgaaccatctccatccctacgaactc 679

                                                                       
Query: 121 cttttaaattaatccttaaatgtgattgttttcagatgataaaggacagatactgtcaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 cttttaaattaatccttaaatgtgattgttttcagatgataaaggacagatactgtcaat 619

                                                                       
Query: 181 aattatttagtcttcctaacacctatggctggggatggccttaaaattggcaagtgttgt 240
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 618 aattatttagtcttcctaacacctatggctggggatggccttataattggcaagtgttgt 559

                                                                       
Query: 241 actgctaagctgtttgtttatatgtatgccacagcagaggacagctttgttaagtattga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 actgctaagctgtttgtttatatgtatgccacagcagaggacagctttgttaagtattga 499

                                                                       
Query: 301 aacacatggattacacaactgttgttttattttgcagcggtagtcatgaaccagtaccct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 aacacatggattacacaactgttgttttattttgcagcggtagtcatgaaccagtaccct 439

                                                                       
Query: 361 ggacgtgcaggataaatgctttgtcgagctgcctttccagcccctagatttcctttcaac 420
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 438 ggacgtgcaggataaatgctttgtcgagctgcctttccagctcctagatttcctttcaac 379

                                                                       
Query: 421 atataaatatatcgataagtaaataagaaataagtatctgagaaatatagatacttttta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 atataaatatatcgataagtaaataagaaataagtatctgagaaatatagatacttttta 319

                                                                       
Query: 481 agaaagggaaagaagctaggcatggtggcacacactttaatctcagctctcaaaagcgga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 agaaagggaaagaagctaggcatggtggcacacactttaatctcagctctcaaaagcgga 259

                                                                      
Query: 541 ggcaggtagattaaccttatttgagctagacgctcatctgtgttagctggccagcagag 599
           ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 258 ggcaggtagattaaccttatttgagctagacactcatctgtgctagctggccagcagag 200


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space:   595209
Effective search space used:   595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)