BAC Information

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BAC

Clone NameMSMg01-087N06
Chromosome4 (Build37)
Map Location 8,219,210 - 8,219,338
singlet/doubletsinglet
Overlap genenone
Upstream geneCar8, LOC100039494
Downstream geneLOC100039505, LOC100039478, Rab2, EG666752, LOC666760, Chd7, LOC666782, LOC100039584, 4933402J24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-087N06.T7 (MSMg01no087_n06.b1)MSMg01-087N06.TJ (MSMg01no087_n06.g1)
ACCAG306743AG306744
length772810
length of high quality
(start - end)
131 (130 - 260)41 (140 - 180)
definitionCHROMAT_FILE: MSMg01no087_n06.b1 PHD_FILE: MSMg01no087_n06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:05 2005CHROMAT_FILE: MSMg01no087_n06.g1 PHD_FILE: MSMg01no087_n06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCCCTTTTTCTGTTTTTNCTTTCTTTCCCTTTTCCCCTTCCTCCTTCT
TATCTCATCATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGA
GGATCCGCGGAATTCTTAGCAATGCGCCTCCACAATGCTTGGTATTGTGT
CCTACATTTTACCCCTTGAACAAAAACTCATCGCTCAGCTCCTAGTTTCA
ATCCCCTGGCAACTCAACCACAGCTTCCTGGAAAAGCCTTTCCTGCTCTC
AATCACTTACCAAATGGAAACGTAATCCCTAGCAACGCAGCAGGGTCATT
AACAGCATACAGTTCTGCTAAACACAAAGCTGGTACCCAAGTGCCTTATT
TTGCACACCTTTGTTCCCCTGGAGCACGGAACTTCCAGCAAGTGACATCC
CGTAGCTCCAGATTATTTCATGTACTTATACGTGTCTTTCTGTGACTACC
AAATGAACATATTAATTGTAGATTACTTGCTGACAATTGCATAAACCCAT
AGAAAATGATCCTCTAAGTTTTATGCCTGTTCTGTTCCTCCCATGTCCTT
GCCCCCTTATCCATGCATGTGCATTCTACTGATCTCCCTTTCTCCTATGA
TTGGTATATTTGCATGATGTGCGCTCCTGTGCTCCCCCTCCCATTTTCCC
CTTTCAATTACCCTTCCTTCTCTTACTTCCCTTTTACCTCTTATAAACAC
TCCTCCCATCCCCACTCATACACTACTATCTATTTCTCTACTTTCCCTAC
CCTTTTCATTTTCTTATCTCCC
CTTTTTTTNCNCCNCCNNNNTNCCCTGTCTCGNTTTTCCGTGNCTCTTCT
TCATNCNNCCCTTACTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCCCATTCA
AACAGAGCATTTCCAGCATCTTAGCCTCAGTTTATGCCCTGAATAGGTTC
ATATAGTCTCTCTCCACACGGAATAAAACACACAAGTTCTTTCACTAAGG
ATCATCTGAGACTGGTCTGCTTTTACTACGCTGTAACTTGGGTGCGGATT
CTCTCACATGATGCACTCATCATTGGACCTCGGACCCTCCTTCCTGTCTT
GCATTCTTTCTTACACATAGCTTTACCTCAGATCTCTGTTCTCTGATACT
GCCACTGTCACAGCCGTTATGGGATTTTTTTATCTGCCCACCTGCTATCT
CGTTATTCCTTTTCCAAGAGCTGCGATTAATTCCGCCCTTACAAAAAAAG
AATTTTTTCTCCATCCTCCTCTATTCATGCCTCAATGATTGACCCCCTTA
TTCGCAATAACTTTACACTGTCAAACTTAAACGACCCTGGAATCCATTTT
TTCTTCCACATCTACGATATTTTTCCTTGTTTGAATAATCTTCTTCCTTA
ATAACTTTTATTTTCTTATACCTAACAACCTTATCCAACCACTAATTCTA
CCGATACCTATTAATTCTATACCCCCTGTTCATCTTATCCACACTCCCTT
CTTTTTTCCCCCTTTGTACCTTTACCTCTTACTTCCCTATTTCTTACCCT
TACTTTTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no087_n06.b1 MSMg01no087_n06.b1 CHROMAT_FILE:
MSMg01no087_n06.b1 PHD_FILE: MSMg01no087_n06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:05 2005
         (131 letters)



>mm_chr4_8219010_8219539
          Length = 530

 Score =  244 bits (126), Expect = 2e-69
 Identities = 129/130 (99%), Gaps = 1/130 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccacaatgcttggtattgtgtcctacattttaccccttgaacaaaaactcatcgctcagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ccacaatgcttggtattgtgtcctacattttaccccttgaacaaaaactcatcgctcagc 270

                                                                       
Query: 61  tcctagtttcaatcccctggcaactcaaccacagcttcctggaaaagcctttcctgctct 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 269 tcctagtttcaatcccctggcaactcaaccacagcttcctggaaaa-cctttcctgctct 211

                     
Query: 121 caatcactta 130
           ||||||||||
Sbjct: 210 caatcactta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 131
Length of database: 530
Length adjustment: 8
Effective length of query: 123
Effective length of database: 522
Effective search space:    64206
Effective search space used:    64206
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)