BAC Information

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BAC

Clone NameMSMg01-087O10
Chromosome4 (Build37)
Map Location 142,720,416 - 142,851,435
singlet/doubletdoublet
Overlap genePrdm2, LOC666018, EG626575, LOC433776
Upstream geneEG665983, LOC546484, 6330411D24Rik
Downstream genePdpn, Lrrc38, LOC621961, Pramel1, 4732496O08Rik, Oog4, LOC666015, LOC626700, OTTMUSG00000010207, LOC100040854, LOC100040861, BC080695, LOC666049, LOC279185, LOC277668, LOC100040924, OTTMUSG00000010333, LOC277666, OTTMUSG00000010009, OTTMUSG00000010328, OTTMUSG00000010433, LOC195555, LOC194224, LOC626889, LOC329984, LOC626922, LOC626943, LOC100041127, LOC436146, Pramel4, LOC100041077, LOC100041144, Oog3, Oog2, C87977
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-087O10.T7 (MSMg01no087_o10.b1)MSMg01-087O10.TJ (MSMg01no087_o10.g1)
ACCAG306799AG306800
length698696
length of high quality
(start - end)
342 (72 - 413)285 (69 - 353)
definitionCHROMAT_FILE: MSMg01no087_o10.b1 PHD_FILE: MSMg01no087_o10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:11 2005CHROMAT_FILE: MSMg01no087_o10.g1 PHD_FILE: MSMg01no087_o10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,720,416 - 142,720,757)(142,851,154 - 142,851,435)
sequence
CTCTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAAAGAGGATCCGC
GGAATTCCCTATTGCCGAGACCAGTAGCAGGTAAGGAGCACTGGCGGCTG
AAAGCAGTGCTGTTCCTCACTACAGCCAACTCAACTGTGTCGCCCAAGCA
CCTGTGTGGCTAAATATGACCAGATCGACAGCAACTAACACTCAGAACGT
TTCGAAGTGCCTTCCAAAAGAGCTCAATCCTTCAGCACTACAGGGAACTG
TTGTGCCCAATGTCTAGAACTTTCTTTTGCTATGCTTCAAGGCACACAGC
ACCAAGAACTTTACCTGAGTGACACTGGAACCTTGGTATGCTTAGGTCTT
CTCTCCAAAACAAGTCACTCCACAGCTGTCCCTAACTCTGTTTGCTTCCA
ATACCCAGAATTACCCCCATGACAATCCAGAATCAAGACAGGCTGCATAG
GTGTCCAAATATTTGCAGAGTAACCTTCTGATGATGGCCACTAACCTGTG
GACATTATTTGGGAATAATAAGGAATTCCAAATGCACATCAACTCAGCTT
GAGAAGTCCATATAACAGGCTATCCCTAGGTCCACATCACTGTCCCTGAT
AACCATGTGTATATGCCCAGAATATGCAATAAGGTAGTAAGGTTAGCTCA
GATCTCTCCTGAGATTCTTTCTTTATTGGAGAAGCATTGATCCTCAGT
TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTACACGCGGAATTCAGCAGCGCTGCTCTTTCCTTGGCGGCC
CGGAGAGACTTTCGCCTCCATAGGTGTCTGGCTGTTGCTGGTGTTCCTTG
GCCTATGGCGGTATTGCTCCATTCTCCAATCTGCCTTACACTGATCTCTT
CCTATTCCCTGTGTGCTTGTGTATATATCCCTAGGCTCCTCCACATCGAC
TTTCCTGGAATGCAGGTGCCTGCACTAAGGGCCCACTTAGATAACCCGGG
CTAAGCTCTTTCTTGTCAGTAATCTTAATTGGGGCTGTAAGGTGGACTCA
GCATGGAAAGCGCTTGCTTTGCAATAGTGAGGGCTTGAGTTCGATTCCCG
GAACCCAGCCCACAGCTGGTCGGAGTGCAGATGTGTATAATTTGATCCAT
GAACTTCCAGAAGTAGAGACAGACCGATCTCCGTATCTGACTGACCAGTT
ATCAAAGCTAGCTTTGTGGCAAAGCTCTAGGTCTACGAGAAACCCTGTCT
CAAACCTAAGGGAGAAGCCCCTAAGGCCTGACAGCTGGTGTTTGTCTTCT
GAATTCCATGCCCATGAGCACGGATATGTACACATATTCCTGCATACTCT
CACACACACACACTTTTCCATACTCACTCTTTTTCCCTTTCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no087_o10.b1 MSMg01no087_o10.b1 CHROMAT_FILE:
MSMg01no087_o10.b1 PHD_FILE: MSMg01no087_o10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:11 2005
         (342 letters)



>mm_chr4_142720216_142720957
          Length = 742

 Score =  646 bits (334), Expect = 0.0
 Identities = 340/342 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagtagcaggtaaggagcactggcggctgaaagcagtgctgttcctcactacagccaact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtagcaggtaaggagcactggcggctgaaagcagtgctgttcctcactacagccaact 260

                                                                       
Query: 61  caactgtgtcgcccaagcacctgtgtggctaaatatgaccagatcgacagcaactaacac 120
           ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaccatgtcgcccaagcacctgtgtggctaaatatgaccagatcgacagcaactaacac 320

                                                                       
Query: 121 tcagaacgtttcgaagtgccttccaaaagagctcaatccttcagcactacagggaactgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcagaacgtttcgaagtgccttccaaaagagctcaatccttcagcactacagggaactgt 380

                                                                       
Query: 181 tgtgcccaatgtctagaactttcttttgctatgcttcaaggcacacagcaccaagaactt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtgcccaatgtctagaactttcttttgctatgcttcaaggcacacagcaccaagaactt 440

                                                                       
Query: 241 tacctgagtgacactggaaccttggtatgcttaggtcttctctccaaaacaagtcactcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tacctgagtgacactggaaccttggtatgcttaggtcttctctccaaaacaagtcactcc 500

                                                     
Query: 301 acagctgtccctaactctgtttgcttccaatacccagaatta 342
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acagctgtccctaactctgtttgcttccaatacccagaatta 542


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space:   244089
Effective search space used:   244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no087_o10.g1 MSMg01no087_o10.g1 CHROMAT_FILE:
MSMg01no087_o10.g1 PHD_FILE: MSMg01no087_o10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:11 2005
         (285 letters)



>mm_chr4_142850954_142851638
          Length = 685

 Score =  507 bits (262), Expect = e-148
 Identities = 277/282 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattcagcagcgctgctctttccttggcggcccggagagactttcgcctccataggtgtc 60
           |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct: 482 aattcagcagcgctgctctttccttggctgcccggagagacttttgcctccataggtgtc 423

                                                                       
Query: 61  tggctgttgctggtgttccttggcctatggcggtattgctccattctccaatctgcctta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tggctgttgctggtgttccttggcctatggcggtattgctccattctccaatctgcctta 363

                                                                       
Query: 121 cactgatctcttcctattccctgtgtgcttgtgtatatatccctaggctcctccacatcg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 cactgatctcttcctattccctgtgtgcttgtgtatatatccctaggctcctccacatcg 303

                                                                       
Query: 181 actttcctggaatgcaggtgcctgcactaagggcccacttagataacccgggctaagctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 actttcctggaatgcaggtgcctgcactaagggcccacttagataacccgggctaagctc 243

                                                     
Query: 241 tttcttgtcagtaatcttaattggggctgtaaggtggactca 282
           ||||| | ||| ||||||||||||||||||||||||||||||
Sbjct: 242 tttctcgccaggaatcttaattggggctgtaaggtggactca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)