Query= MSMg01no088_f14.b1 MSMg01no088_f14.b1 CHROMAT_FILE:
MSMg01no088_f14.b1 PHD_FILE: MSMg01no088_f14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:47 2005
(476 letters)
>mm_chr4_110131123_110131998
Length = 876
Score = 884 bits (457), Expect = 0.0
Identities = 472/477 (98%), Gaps = 2/477 (0%)
Strand = Plus / Minus
Query: 1 gtagttatgactatatgtcagcccaaattcatcaaagctaaagttttacaacttctattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 gtagttatgactatatgtcagcccaaattcatcaaagctaaagttttacaacttctattt 432
Query: 61 tagaatatctcacagctttacagaaagaatgcttggttaatttttccctgaaagagtaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tagaatatctcacagctttacagaaagaatgcttggttaatttttccctgaaagagtaat 372
Query: 121 gtgtatctaattccctagtgtttgataataacggactttcatgctttggtcttacacagg 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 371 gtgtatctaattccctagtgtttgataataatggactttcatgctttggtcttacacagg 312
Query: 181 accatattacacattcttaatttcatactagttaattttg-agttccttaatgctcactc 239
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 311 accatattacacattcttaatttcatactagttaattttgta-ttccttaatgctcactc 253
Query: 240 ttcagtaaagattttaaatattttctacttgcatgttagtcataatggaaagaaatattt 299
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ttcagtaaagaacttaaatattttctacttgcatgttagtcataatggaaagaaatattt 193
Query: 300 ttaatttaattagtattaatgtagacacctatattcatcacagaaagaaaatgagaaggc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ttaatttaattagtattaatgtagacacctatattcatcacagaaagaaaatgagaaggc 133
Query: 360 tgcttctatggagccatgtggtggtatccggacaaagtagtgaggcgagctagaagagca 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 tgcttctatggagccatgtggtggtatccggacaaagtagtgaggcgagctagaagagca 73
Query: 420 aagagtctggggtgtttctgcctgtcacccaggctcagaaaccgttcttccacacag 476
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 aagagtctggggtgtttctgcctgtcacccaggctcagaaaccgttcttccacacag 16
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space: 403556
Effective search space used: 403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no088_f14.g1 MSMg01no088_f14.g1 CHROMAT_FILE:
MSMg01no088_f14.g1 PHD_FILE: MSMg01no088_f14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:47 2005
(553 letters)
>mm_chr4_109998746_109999698
Length = 953
Score = 1025 bits (530), Expect = 0.0
Identities = 548/554 (98%), Gaps = 2/554 (0%)
Strand = Plus / Plus
Query: 1 attatttgatgctagatgatcagtgactagagctgagctctggaaagtgtcactcagtgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attatttgatgctagatgatcagtgactagagctgagctctggaaagtgtcactcagtgg 260
Query: 61 aagctagtattttagggtagcaggcaatggaaaaaagaataaggcctaacctgtctgtgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagctagtattttagggtagcaggcaatggaaaaaagaataaggcctaacctgtctgtgc 320
Query: 121 tcacaatagagtgagcaacacaaacatagaaacaaagccataactggaatggtcaccttc 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcacaatagagtgagcaacacagacatagaaacaaagccataactggaatggtcaccttc 380
Query: 181 agaggcacaggttataggtatgaagatgaaggaggaatgatgtcactaggatgtgtgatt 240
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 agaggcgcaggttataggtatgaagatgaaggagggatgatgtcactaggatgtgtgatt 440
Query: 241 tgcatacagagggccctgaaggagagatactcctggagacgtcaaggaacaccagaacct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcatacagagggccctgaaggagagatactcctggagacgtcaaggaacaccagaacct 500
Query: 301 gtcccctttcctcacttgacctctactacaaataagtgaacaatttcatctacaacttgt 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 501 gtcccctttcctcacttgacctctactacaaataagtgaacaatttcatctacaacatgt 560
Query: 361 tgtgaatgggctgtgaggtggactggccatattccattctcccagaaatcttcaggctgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtgaatgggctgtgaggtggactggccatattccattctcccagaaatcttcaggctgt 620
Query: 421 ttgatagatcaaaggggtatcctggttaagtcctctcccctctttgttcagtcccagctc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttgatagatcaaaggggtatcctggttaagtcctctcccctctttgttcagtcccagctc 680
Query: 481 tccctgtaagtgatcgtagatttttgttacttgttaagagaactacttatatccattgca 540
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 681 tccctgtaagtgatcgtagatttt-gttacttgttaagagaactacttatatccattgca 739
Query: 541 cagttt-gaatatg 553
|||||| |||||||
Sbjct: 740 cagttttgaatatg 753
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space: 512049
Effective search space used: 512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
