BAC Information

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BAC

Clone NameMSMg01-088I19
Chromosome4 (Build37)
Map Location 16,776,116 - 16,776,342
singlet/doubletsinglet
Overlap genenone
Upstream geneCalb1, Decr1, Nbn, Osgin2, Ripk2, LOC667150, LOC383994
Downstream geneLOC100040154, LOC667212, LOC100040173
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088I19.T7 (MSMg01no088_i19.b1)MSMg01-088I19.TJ (MSMg01no088_i19.g1)
ACCAG307275AG307276
length684663
length of high quality
(start - end)
247 (127 - 373)239 (106 - 344)
definitionCHROMAT_FILE: MSMg01no088_i19.b1 PHD_FILE: MSMg01no088_i19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:04 2005CHROMAT_FILE: MSMg01no088_i19.g1 PHD_FILE: MSMg01no088_i19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCCTTATCCGAGCCTTTAACACTAGATTACCTTTTTGTGTGTGTGA
AATATATACTTTTATTTTTCAGAATATCATTATTTTAAAAATAAGATGAC
CAGTGATAAAGTAGGTATATGTTGATGGTCTGCCATCCTCTGTGGGGAGG
TGGTGGTTATTGGCCGCATTTGATTTCTCAGAGTTTTGAGCAATGTTTTA
TTCATGTGACTGTGTTTGGAGAAGACTCTAAGTATAGCTTGAAGGCAATC
GTTTTTCCTCCCAGTTTTTTTTATTGCCTTTGGAGCATTAAGAACCATCT
CTATTTTTTTTCCCCCCCCCCCACCCTCCTGATAGAAAAATATCAATTGT
TGTCCCCAAACTCACAAGCTTATCTCTTTATTAGTATACTGTTTCTGACT
CTACGGTTTTTACATACTTATAAACAGAATTTGTTTTTCCTTTATTTTGA
TTTAATGTTTGACCCACTAAACATCTTATACTGATATTTGTGCTCCAAAG
TGCACCTTTACATTTTCTCCTCTTCTATCTTCCCTTCTTATCCCCCTACT
CTCTTTCTGTTACCCTGAAGATACTTTTTTCATAATTTCTTATAAATCCC
ATCTTTATTATTTATCCATATTTCATTTCCAGCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXACTCTTGCACTTGCGCATAAGGCTTATTTACTAGTTAGGTTTAGCG
CCAGCCAGCGCCATCTTATAATGGCGATTGCTCACAGCACGGCTCTCCTC
ACAGCCTGGCCCTTACAGCTCACTGCCACTCATTTAAAACACATAGGTCA
AACATAGGACACTTTACAAAGCTCCAAACTGCTAACATGGTCAGACAAAA
ACAAAACAAAAAAAAACAAACAACAAAAAAACAAACAAACAAACAAAAAA
ACCAATACCCTTTGTGGTTAAAGGTCTTCCTGTGAATCTATGGTGAACAG
ACATACTCTCCCACATGGGGATGATAATGTTTAGCCCCAACGAGACTGTC
ACCAATTTGATGCTAAAAACAGGGTACCTCCCAGGGAAGGGTCTAGGGAA
AGATGAACAAGGAAGGATTTCTCCCACTATGCCCACACCCCAAAATGATA
AAAAGGGTTTAGGGGCAGACTTTTTTCTTTAGAGACCATTGCTCCTCCTG
CATTTCAGGCAGACAAATTATCTTGGAAGTCCAATGATCCTGTCTGGATC
GATCAGTGGTCTATGCCTCAAGAGAAAGTTCAGAGAGCCCTACAGTTGGT
GCAGGAACAATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_i19.b1 MSMg01no088_i19.b1 CHROMAT_FILE:
MSMg01no088_i19.b1 PHD_FILE: MSMg01no088_i19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:04 2005
         (247 letters)



>mm_chr4_16775916_16776562
          Length = 647

 Score =  400 bits (207), Expect = e-116
 Identities = 222/227 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcattattttaaaaataagatgaccagtgataaagtaggtatatgttgatggtctgccat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcattattttaaaaataagatgaccagtgataaagtaggtatatgttgatggtctgccat 260

                                                                       
Query: 61  cctctgtggggaggtggtggttattggccgcatttgatttctcagagttttgagcaatgt 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 cctctgtggggaggtggtggttattggccgcatttgacttctcagagttttgagcaatgt 320

                                                                       
Query: 121 tttattcatgtgactgtgtttggagaagactctaagtatagcttgaaggcaatcgttttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 tttattcatgtgactgtgtttggagaagactctaagtatagcttgaaggcaatagttttt 380

                                                          
Query: 181 cctcccagttttttttattgcctttggagcattaagaaccatctcta 227
           |||||||||||||| ||||||||| ||||||||||||||||| ||||
Sbjct: 381 cctcccagttttttgtattgccttcggagcattaagaaccatttcta 427


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)