Query= MSMg01no088_p04.b1 MSMg01no088_p04.b1 CHROMAT_FILE:
MSMg01no088_p04.b1 PHD_FILE: MSMg01no088_p04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:35 2005
(485 letters)
>mm_chr4_154797989_154798873
Length = 885
Score = 884 bits (457), Expect = 0.0
Identities = 475/481 (98%)
Strand = Plus / Plus
Query: 5 gaattcttctatccttgggctctggccatgagcctgccagcctgctcagcctgacggttt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttctatccttgggctctggccatgagcctgccagcctgctcagcctgacggttt 264
Query: 65 accacgcctctaccacaggcttcctaactggactgcagacaggaaccatgatccagcaga 124
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 265 accacgcctctaccacaggcttcctagctggactgcagacaggaaccatgatccagcaga 324
Query: 125 aagagaacaatttagcactgttctgagagggcctcatctcagtgcaacagtggtcacagg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aagagaacaatttagcactgttctgagagggcctcatctcagtgcaacagtggtcacagg 384
Query: 185 gcccaatgcagtgtgagggccagcacgagggctcagaactgggttagggaagagtgggcc 244
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 385 gcccaatgcagtgtgagggccagctcgagggctcagaactgggttagggaagagtgggcc 444
Query: 245 acatgatgaagactcagggcatggtaaccaataggagagggccaacatgcacaccactgc 304
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acatcatgaagactcagggcacggtaaccaataggagagggccaacatgcacaccactgc 504
Query: 305 agagtcaatatgctcaccactgcacagggtcaacatgcacacagctgcacagggtcaaca 364
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaagtcaatatgctcaccactgcacagggtcaacatgcacacagctgcacagggtcaaca 564
Query: 365 tgcacaccactgcacagaattctagacccagggggcgggcccagggctgcgtgttaggtg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgcacaccactgcacagaattctagacccagggggcgggcccagggctgcgtgttaggtg 624
Query: 425 agaaacacgtggaaaattatgggtgctgaactgcctactatgggacccatatgcttcagc 484
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 625 agaaacacgtggaaaattatgggtgttgaactgcctactatgggacccatatgcttcagc 684
Query: 485 a 485
|
Sbjct: 685 a 685
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space: 415625
Effective search space used: 415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no088_p04.g1 MSMg01no088_p04.g1 CHROMAT_FILE:
MSMg01no088_p04.g1 PHD_FILE: MSMg01no088_p04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:35 2005
(379 letters)
>mm_chr4_154923363_154924141
Length = 779
Score = 690 bits (357), Expect = 0.0
Identities = 372/379 (98%), Gaps = 4/379 (1%)
Strand = Plus / Minus
Query: 1 aagtctatacatgaggctggccttgaagtcagagtcctgtgcttctgccttctgagtgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 aagtctatacatgaggctggccttgaagtcagagtcctgtgcttctgccttctgagtgct 687
Query: 61 gaactaaaggagtatgccacagcacctggctaattattttgaattaaaaaaaaaaaaaaa 120
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 686 gaactaaaggagtatgccacagcacctggctaattattttgaatt----aaaaaaaaaaa 631
Query: 121 gaatatacattctacctataaattataaataataatataaatagtaataatgaacactct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 gaatatacattctacctataaattataaataataatataaatagtaataatgaacactct 571
Query: 181 ttcagttattgtgaacccaattacatccatttctagggtttccttatcctataagatagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 ttcagttattgtgaacccaattacatccatttctagggtttccttatcctataagatagc 511
Query: 241 ctatacattctattaagttttgaccctggagggcataggaagctcgtaaatggacaaccg 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 510 ctatacattctattaagttttgaccctggagggcataggaaactcgtaaatggacaaccg 451
Query: 301 cctgttcttcaacagacttcaatggctttgtcttacacagttggatgatcagccagtctg 360
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 450 cctgttcttcaacggacttcaatggttttgtcttacacagttggatgatcagccagtctg 391
Query: 361 ctggaacatccctgagaag 379
|||||||||||||||||||
Sbjct: 390 ctggaacatccctgagaag 372
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space: 284900
Effective search space used: 284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
