Query= MSMg01no089_b21.b1 MSMg01no089_b21.b1 CHROMAT_FILE:
MSMg01no089_b21.b1 PHD_FILE: MSMg01no089_b21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:49 2005
(641 letters)
>mm_chr4_50489867_50490908
Length = 1042
Score = 982 bits (508), Expect = 0.0
Identities = 535/544 (98%), Gaps = 2/544 (0%)
Strand = Plus / Minus
Query: 99 ctaaggactccaaaatccatttctgtccaggaaagcaatggaaccaggaaaaatgataaa 158
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1042 ctaaggactccaaaatccatttctgtccaggaaagcaatggaaccaggacaaatgataaa 983
Query: 159 gcaaaatctcagaaccctgaaaatcagccaaagtccctcaacagtgcaaaaagtaggggt 218
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 982 gcaaaatctcagaaccctgaaaatcagccaaagtccctcaacagtgcaaaaagtagggtt 923
Query: 219 tttattcagaaaaaacatctgagtctcagtgaaaaaagcacatgctgaggcagttgaact 278
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 922 tttattcag-aaaaacatctgagtctcagtgaaaaaagcacatgctgaggcagttgaagt 864
Query: 279 ctacctatgcccactcttctcagcctggcttgttgaaactctccagccttgttagaagga 338
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 ctacctatgcccattcttctcagcctggcttgttgaaactctccagccttgttagaagga 804
Query: 339 cctttgaacaccagcaccctggcagtcacagaaagacagacttggagcaacctcaaagat 398
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 803 cctttgaacaccagcaccctggcagtcacaggaagacagacttggagcaacctcaaagat 744
Query: 399 accacctacaaagaattgctcttcctagatctttgtatcaggtcttgtcctccctttatt 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 accacctacaaagaattgctcttcctagatctttgtatcaggtcttgtcctccctttatt 684
Query: 459 ggattcactgactgcttaaggaataaaccttaaaccccagagagatgttcaggaacatcc 518
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 683 ggattcactgactgcttaaggaataaaccttgaaccccagagagatgttcaggaacatcc 624
Query: 519 agtcctagaaatttaccaatacaaaaaagattttattgtttaacacatactatgttaaac 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 agtcctagaaatttaccaatacaaaaaagattttattgtttaacacatactatgttaaac 564
Query: 579 aagactctaacccatggtttagaagggctttgaaagactaatattatcaaaagaag-ttt 637
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 563 aagactctaacgcatggtttagaagggctttgaaagactaatattatcaaaagaagcttt 504
Query: 638 ggaa 641
||||
Sbjct: 503 ggaa 500
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1042
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1032
Effective search space: 651192
Effective search space used: 651192
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no089_b21.g1 MSMg01no089_b21.g1 CHROMAT_FILE:
MSMg01no089_b21.g1 PHD_FILE: MSMg01no089_b21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:49 2005
(576 letters)
>mm_chr4_50417069_50418047
Length = 979
Score = 1065 bits (551), Expect = 0.0
Identities = 571/579 (98%), Gaps = 3/579 (0%)
Strand = Plus / Plus
Query: 1 acatgaaactaatatgaatatgagtttccatctgacccattaatttagactaaaagtcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acatgaaactaatatgaatatgagtttccatctgacccattaatttagactaaaagtcac 260
Query: 61 cgatatttggttccagacataactagtgattatcgatgttattttagagaattaattggt 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 cgatatttggttccagacataactagtgattatccatgttattttagagaattaattggt 320
Query: 121 ttgtctttcatctgagataggaaataaagcatagactcagaccaatgggatagatttgag 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 ttgtctttcatctgagataggaaatagagcatagactcagaccaatgggatagatttgag 380
Query: 181 caatcagtggaaacataaatgaagcagattgagaagagccaggc---tatgattgcttag 237
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct: 381 caatcagtggaaacataaatgaagcagattgagaggagccaggcagttatgattgcttag 440
Query: 238 caaatgttaatttttaatcattatatgttacacaaaaacatatgaaataaaatctgggaa 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaatgttaatttttaatcattatatgttacacaaaaacatatgaaataaaatctgggaa 500
Query: 298 atacgcttagatattttaattacatatgtcttgtctttagcaaaattatgaatgatgcaa 357
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 501 atacgcttagataatttaattacatatgtcttgtctttagcaaaattatgaatgatgcga 560
Query: 358 tcttttataaactcatatagtgaattatgagttatcattttcatgctcatatttgaaata 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcttttataaactcatatagtgaattatgagttatcattttcatgctcatatttgaaata 620
Query: 418 ccccaggtatgaaaacttatcaaaagagaaaaaaaaagaattaacatttcacctgatact 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccccaggtatgaaaacttatcaaaagagaaaaaaaaagaattaacatttcacctgatact 680
Query: 478 ggagtcaaaattacaagaataaatgttattgtttcataaatgcacaatagttaatgcttc 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggagtcaaaattacaagaataaatgttattgtttcataaatgcacaatagttaatgcttc 740
Query: 538 taaaattactgatatgattatacatttgatatacaggta 576
|||||||||||||||||||||||||||||||||||||||
Sbjct: 741 taaaattactgatatgattatacatttgatatacaggta 779
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 979
Length adjustment: 10
Effective length of query: 566
Effective length of database: 969
Effective search space: 548454
Effective search space used: 548454
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
