BAC Information

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BAC

Clone NameMSMg01-089C08
Chromosome4 (Build37)
Map Location 78,708,225 - 78,708,518
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039974, LOC100039996
Downstream geneLOC100040026, LOC100040036, LOC667922
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089C08.T7 (MSMg01no089_c08.b1)MSMg01-089C08.TJ (MSMg01no089_c08.g1)
ACCAG307719AG307720
length695683
length of high quality
(start - end)
424 (44 - 467)295 (74 - 368)
definitionCHROMAT_FILE: MSMg01no089_c08.b1 PHD_FILE: MSMg01no089_c08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:51 2005CHROMAT_FILE: MSMg01no089_c08.g1 PHD_FILE: MSMg01no089_c08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACTTTGCTCCCAGAGCTTAGTCTTCAAAGCTCCTGCCAGGACGGCCC
AGTAAGGCCCACTTACAGCATTCAAACACTTTTCTAGGCCAATATCCCCA
AATCTTACATATTGCTAATAGAATCAGTTTTATAAATTCTGTTACATCAG
TGTGCCACTCACTGATACCAAATCTCTATTAGTTACTTCTCTATTGTGTG
GTAAAATATTTCTACTGGAGCAACTTATAACAGAAAGTGTTTAATCTGGT
TCACAGATTGAGACAGAGTTAATGACAGTAGAGCTAAAGAACAGCTGAAG
GAGGACATCTTCATCCATATCCATGATGCAGAGAAAGAGAAAGTTTTAGA
AATTCTAGGAGGTGTTTTGTTTTATTTTGTTTTTTGTTTGTTTGTTTGTT
TGTTTGTTTTTTTGANACCTCCCGCTTCCCCCTCCTTTCATTTTACCTCC
CCCTTTCTTCTCCTTTTCTAATTTTCCTTCTTCTTTTTCTTACCTCCTCC
ATTACTTTTCCACCTTCTTCTTTCCTATCCCCCTTCTTCACCATTTTCTC
TTCCCTTTACTTTTCTCCACTTCTACCCTTTTCTTCCACCCTTTTTTCCC
TTTTTTTCCCCTCTTTTTTCACTATTCCTTCTCCTCCCCTTCACC
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCACTCTTGGTTCATTAGATTTGAGACC
TCTTTACTTTCTGTCTTGTCTGTTAGTGAGCTGCTTTTCTTTTTTTCATT
AGGATTAAGAACGATTTAATCCAAACTTCTATAAATATGCTTTCTTGTTC
TTTTTAAGCAATTTATTTTGTGTCCTGAATTCATATGTCAGATCTTTGAT
TGTTTATTTCTCTTGAATTCTTTATTAGACCTCAGAAATTCTCACTGGTT
TTCTTAAATATTTCAATTATTTCATTCTCTCTTTGACTAGATGATTTTAT
ACTTTTTATATTTATATTCACTGACTCTTTCTTCAGGTTCATTGTTGAAA
GCATTAAAGCTAAAAGCTTGTTTTTTTTTTTTCCTTTGTACTTGTTATTG
TGTCTGTCTACATCTGATGTTTAAGAATCTTTTATTTTATAATTATTTTT
TCTCATATGTTACATCTGACTGTAATTTCCCCTCCCTCCAAACATCGCAC
TCACCTCCTCCTCTGCCCATATTCACCTCACCCCATCTTTCTCCTAGACC
CAGTCCTCTTTCATTTCCCTTCAGGAAACAGCAAGCCTCTCAGGCATATC
AACCAAACAGGCCATAACAAGTATCAATTAGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_c08.g1 MSMg01no089_c08.g1 CHROMAT_FILE:
MSMg01no089_c08.g1 PHD_FILE: MSMg01no089_c08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:51 2005
         (295 letters)



>mm_chr4_78708025_78708718
          Length = 694

 Score =  555 bits (287), Expect = e-162
 Identities = 293/295 (99%), Gaps = 1/295 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cactcttggttcattagatttgagacctctttactttctgtcttgtctgttagtgagctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cactcttggttcattagatttgagacctctttactttctgtcttgtctgttagtgagctg 260

                                                                       
Query: 61  cttttctttttttcattaggattaagaacgatttaatccaaacttctataaatatgcttt 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 cttttctttttttcattaggattaagaatgatttaatccaaacttctataaatatgcttt 320

                                                                       
Query: 121 cttgttctttttaagcaatttattttgtgtcctgaattcatatgtcagatctttgattgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttgttctttttaagcaatttattttgtgtcctgaattcatatgtcagatctttgattgt 380

                                                                       
Query: 181 ttatttctcttgaattctttattagacctcagaaattctcactggttttcttaaatattt 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 t-atttctcttgaattctttattagacctcagaaattctcactggttttcttaaatattt 439

                                                                  
Query: 241 caattatttcattctctctttgactagatgattttatactttttatatttatatt 295
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 caattatttcattctctctttgactagatgattttatactttttatatttatatt 494


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 694
Length adjustment: 9
Effective length of query: 286
Effective length of database: 685
Effective search space:   195910
Effective search space used:   195910
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)