BAC Information

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BAC

Clone NameMSMg01-089J22
Chromosome4 (Build37)
Map Location 87,619,554 - 87,619,791
singlet/doubletsinglet
Overlap geneMllt3
Upstream geneSlc24a2
Downstream geneBC057079, Ptplad2, Ifnb1, OTTMUSG00000007655, Ifna14, Ifna9, Mrpl48-ps, Ifna12, C87499, Ifna13, LOC546834, OTTMUSG00000011275, Ifna2, Ifnab, LOC546835, Klhl9, LOC100040477, Ifnz, LOC100041062, EG545645, LOC668147, OTTMUSG00000011291, OTTMUSG00000011290, OTTMUSG00000011265, Ifnz, OTTMUSG00000011269, OTTMUSG00000011270, OTTMUSG00000011272, OTTMUSG00000011268, OTTMUSG00000011273, OTTMUSG00000011282, OTTMUSG00000011285, OTTMUSG00000011289, Ifna7, Ifna11, Ifna6, Ifna5, Ifna4, Ifna1, Ifne1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089J22.T7 (MSMg01no089_j22.b1)MSMg01-089J22.TJ (MSMg01no089_j22.g1)
ACCAG308071AG308072
length695696
length of high quality
(start - end)
321 (41 - 361)292 (73 - 364)
definitionCHROMAT_FILE: MSMg01no089_j22.b1 PHD_FILE: MSMg01no089_j22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:29 2005CHROMAT_FILE: MSMg01no089_j22.g1 PHD_FILE: MSMg01no089_j22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCACCTGATGACACCGAATGGCTGAGAAGCACCTGAAAAAAATGTTCAAC
ATCCTTAATCATCAGGGAACCGCAAATTAAAACAACCCTGAGATTCCACC
TCACACCAGATCTTAGTCTTTGGCTAAGATCAAAAATTCAGATGACAGCA
GATGCTGGCAAGGATGTGGAGAAAGAGGAACACTCCTCTACTGTTGGTGG
GATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAG
AAAATTGGACATAGTACTACCGGAGGATCCCGCAATAGCTCTCCTGGGCA
TATATCCAATTTATATCCCAACCGGCAAGAAGGACACATGCTCCACTATG
TTCATAGCAGCCTTATTTATAATACCCAGAAGCTGGAAAGAACCCAGATG
CCCCTCCACAGAGGAATGAATACAGAAAATGTGGTACATTTACACAATGG
AGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAA
TGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACTCAATCACAAAA
GAACTCACATGATATGTACTCACTGATAAGTGGATATTAGCCCAGACACT
TAGAATACCCCAGATTTAAGATACAATTTGCTAAACACATGAAGT
CGATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAAGAGAGCAGAAGGTATGGAATGATAGA
GGGAGAGAGAGAGAGAGTCAGACACAGAGGCACTCTTTTGGAAGACTCTA
TAGAAAAACTATCAAAAGTGGTTATATTTTTATATACTAAGCATGGTTTA
CAGTAATACAGTAATACTGTCTTGTATTCAACATATACTGCACACCCAGT
GTGTGCCTAGAACTGGGGAAAGTACAAAAATGAGACAAACAATTTTTGAA
GTGTTAAAGACAGATATAAATAGGAGAAACACCCAGTAAATTCAAGTTGA
ATAATTAATTACCACTTATGTGATCGCCTACTGCACAAAATATATACAAG
GCGTTCCCAGAACACTTCAGCAGACGAGAAGCTGTAAATGAGAGTCCTGG
AGGTCTCCCTGACTCTATCTTTACCCAAGCTTGAGGGACTGTGGCATGGA
TGCAGTACATGCTCTCATGGTCAACTCCATGGGAATTAGAGCCTCCTAGG
ATATCGATAAACCTTTGGTGTTAATGAAGGAGTTTCCCAAAAGCTCTAAC
TGAGAAATCCCAGCTTGGATGTGGATGGCATCACCCCATGCTCTGGGGTC
TCAGATGAATTAAGGAGGAAGTGACCATGACTCTATACGGACTACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_j22.g1 MSMg01no089_j22.g1 CHROMAT_FILE:
MSMg01no089_j22.g1 PHD_FILE: MSMg01no089_j22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:29 2005
         (292 letters)



>mm_chr4_87619300_87619991
          Length = 692

 Score =  453 bits (234), Expect = e-132
 Identities = 237/238 (99%)
 Strand = Plus / Plus

                                                                       
Query: 55  gaggcactcttttggaagactctatagaaaaactatcaaaagtggttatatttttatata 114
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 gaggcactcttttggaagactctatagaaaaactatcaaaagtggttatatttttatata 314

                                                                       
Query: 115 ctaagcatggtttacagtaatacagtaatactgtcttgtattcaacatatactgcacacc 174
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 315 ctaagcatggtttacagtaatacagtaatactgtcatgtattcaacatatactgcacacc 374

                                                                       
Query: 175 cagtgtgtgcctagaactggggaaagtacaaaaatgagacaaacaatttttgaagtgtta 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 cagtgtgtgcctagaactggggaaagtacaaaaatgagacaaacaatttttgaagtgtta 434

                                                                     
Query: 235 aagacagatataaataggagaaacacccagtaaattcaagttgaataattaattacca 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 aagacagatataaataggagaaacacccagtaaattcaagttgaataattaattacca 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)