BAC Information

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BAC

Clone NameMSMg01-089N22
Chromosome4 (Build37)
Map Location 104,909,930 - 104,910,229
singlet/doubletsinglet
Overlap genenone
Upstream geneDab1, C8b, C8a, 1700024P16Rik, Prkaa2, LOC100039513, Ppap2b
Downstream geneLOC433742, LOC665518, LOC434381, Ppia-ps4_954.1, Map1lc3, LOC384039
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089N22.T7 (MSMg01no089_n22.b1)MSMg01-089N22.TJ (MSMg01no089_n22.g1)
ACCAG308252AG308253
length686704
length of high quality
(start - end)
323 (34 - 356)300 (74 - 373)
definitionCHROMAT_FILE: MSMg01no089_n22.b1 PHD_FILE: MSMg01no089_n22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:50 2005CHROMAT_FILE: MSMg01no089_n22.g1 PHD_FILE: MSMg01no089_n22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:50 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
GCGGCGCTXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAACGGG
GCTGCAACCTAGAGGCAGGAGCTGATTCAGAGGCTATGGAGGGGTGCTGC
TTACTGGCTTGCTCCCACATGACTTGCTCAGACTCCTTTCTTATAGAGCC
CAGGTCAATGGCCAAGAGGTGGTCCCACTCACAATGGCCTGGGCCCTCCC
ACATCAATCACTAATCAAGAAAATGTCATACAGGCTTGTCTACAGCCTGA
TCTTTTGGAGGCATTCTCTTAGTTGAGGTTCTGTCCTCACAGATGACTTT
AGCTTGTGTGACGTTGACATAAAACTATCCAGCACAGCTGCTCACATCTA
CCCAGTGTCTACACCACCCTCACATGTGAGCTCTTTCCAAGCCCGAGTCA
TTGCCGGTCCTCTCAGTCTCGAGATAAAGGATGCGCTATCCCAAGGACTC
TTGGTTCCATGCCTGGAACAAGAGGCCACATAGCTGGAGATTATAGCCGT
GAGCTGGAATCAGATCTGAATTCTAGTCTCAATTTTACTCTTAACTGTGT
GACTTGAACAAATTGATCATGGTCTGTGTAATGCACATTTAAAAGCTCCT
TGTGCACATATTTTTGTAGGGTTGAACAAAATAATGCATATAAAAGTTTG
TGGCACAGACCCTGGGACATACAGTGAACCTCTGTC
CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTGGTAGGAGATAGGGATTTTCTCTTT
GGGCTTGCAGGAACAAGGACACCGCATTCTAGGAAAGAGAGCTAAGGAGC
CCTCTTGGGTTTGGAGGAGCTCAAGACAAAAGTAGAGTAGTAGCTCAATA
GCCCGAGAGAAAGAGATTTCTAGAGCAAGGACACTTTAGTTGTAGAGTCA
GGCTTGTAAATAGATATTTTGTATATAGTTAAGAAAATAAAGTTACCTGA
CTGAGCTACCAGGTTTTTATCTCAGTTCATGCCTCCCTTGTCTTTATTGA
TATAAATGTTAGATGATTTAAATGGCTACAATACGCAACTAGTATTTTGA
ATAGCAAGTTGTGAAATATGCGGTCCAGGCAGTTCTCATCCAGAATGGCT
TGCTAGCGAAGGTGCCTGTTATGTATTGTTGGCCAGTTTTTTACTTTCCT
TGTTCTTGCTTGTCATGTTCCTCCCTCCCCCCCTGTTACTCCTTTCTCCT
TTTTCCCTCTTCCCCTTTTCCGCCCCGTCCCTCTATCTTTTTTTTTTCGC
CGATTGTGCCTCCCTCTTCCTATCTCCCTTTTTTTCTTTTCCCTCTTCGA
CCCCTGTATTCCTTTTTCCTGTTCTTCTTTTTTCTCCTCTCTGGTCATTT
GCGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_n22.g1 MSMg01no089_n22.g1 CHROMAT_FILE:
MSMg01no089_n22.g1 PHD_FILE: MSMg01no089_n22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:50 2005
         (300 letters)



>mm_chr4_104909730_104910429
          Length = 700

 Score =  549 bits (284), Expect = e-161
 Identities = 296/300 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctggtaggagatagggattttctctttgggcttgcaggaacaaggacaccgcattctagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 ctggtaggagatagggattttctctttgggcttgcaggaacaaggacaccgtattctagg 260

                                                                       
Query: 61  aaagagagctaaggagccctcttgggtttggaggagctcaagacaaaagtagagtagtag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 aaagagagctaaggagccctcttgggtttggaggagctcaagacaaaagtagaatagtag 320

                                                                       
Query: 121 ctcaatagcccgagagaaagagatttctagagcaaggacactttagttgtagagtcaggc 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcaatagcctgagagaaagagatttctagagcaaggacactttagttgtagagtcaggc 380

                                                                       
Query: 181 ttgtaaatagatattttgtatatagttaagaaaataaagttacctgactgagctaccagg 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttataaatagatattttgtatatagttaagaaaataaagttacctgactgagctaccagg 440

                                                                       
Query: 241 tttttatctcagttcatgcctcccttgtctttattgatataaatgttagatgatttaaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttttatctcagttcatgcctcccttgtctttattgatataaatgttagatgatttaaat 500


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 700
Length adjustment: 9
Effective length of query: 291
Effective length of database: 691
Effective search space:   201081
Effective search space used:   201081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)