Query= MSMg01no089_o23.b1 MSMg01no089_o23.b1 CHROMAT_FILE:
MSMg01no089_o23.b1 PHD_FILE: MSMg01no089_o23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:55 2005
(228 letters)
>mm_chr4_5574535_5575162
Length = 628
Score = 364 bits (188), Expect = e-105
Identities = 206/212 (97%), Gaps = 2/212 (0%)
Strand = Plus / Minus
Query: 7 gaattctcattgcccagaatcacagttccatcaggctttggggacagcagtgtgcctgag 66
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 417 gaattctcattgcccagaatcacagttccatcaggttttggggacagcagtgtgcctgag 358
Query: 67 tcaccggctcttttcagggtttctcaagccctacttgtttgccttcctactcgtatttgt 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tcaccggctcttttcagggtttctcaagccctacttgtttgccttcctactcgtatttgt 298
Query: 127 aggggagtcaactgagaaacatc-gtccatctttgtttttgaaagattaagttgaggctc 185
||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||
Sbjct: 297 aggggagtcaactgagaaaca-cagcccatctttgtttttgaaagattaagttgaggctc 239
Query: 186 cgcctcaattgtggaacaaaacacacacacac 217
||||||| |||||||||||||||||||||||
Sbjct: 238 tgcctcaactgtggaacaaaacacacacacac 207
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 228
Length of database: 628
Length adjustment: 9
Effective length of query: 219
Effective length of database: 619
Effective search space: 135561
Effective search space used: 135561
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no089_o23.g1 MSMg01no089_o23.g1 CHROMAT_FILE:
MSMg01no089_o23.g1 PHD_FILE: MSMg01no089_o23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:55 2005
(457 letters)
>mm_chr4_5516153_5517010
Length = 858
Score = 864 bits (447), Expect = 0.0
Identities = 453/455 (99%), Gaps = 1/455 (0%)
Strand = Plus / Plus
Query: 1 ctgccag-aacaaaacttgactcttaaaagataaacaccaggatgttttcctagccagaa 59
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgccagcaacaaaacttgactcttaaaagataaacaccaggatgttttcctagccagaa 260
Query: 60 gttaaattttgtgttgtagttttattattccagatctgtattttctccacattacctatt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttaaattttgtgttgtagttttattattccagatctgtattttctccacattacctatt 320
Query: 120 aataacaaatacattcaaattgggagctaaacttagataaaaattcagttaaagttcaga 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aataacaaatacattcaaattgggagctaaacttagataaaaattcagttaaagttcaga 380
Query: 180 taaaagtacttttcatcaacacatgtattgttttatgtaatataactttataatttgtaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaaagtacttttcatcaacacatgtattgttttatgtaatataactttataatttgtaa 440
Query: 240 gcacactgagttttatgagctgaaataaatgtgaatattttcatacagttgtatataatg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcacactgagttttatgagctgaaataaatgtgaatattttcatacagttgtatataatg 500
Query: 300 atatatgtattctatatgcatgtttgtgttcaagcatttgcagaaaataactttcatgtt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atatatgtattctatatgcatgtttgtgttcaagcatttgcagaaaataactttcatgtt 560
Query: 360 tataaatacagtcatgaatatatatgtatgtgtgtgacaatattgtaacatatttggatg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tataaatacagtcatgaatatatatgtatgtgtgtgacaatattgtaacatatttggatg 620
Query: 420 acattatactcctaaatgttacaatttagatagaa 454
|||| ||||||||||||||||||||||||||||||
Sbjct: 621 acatcatactcctaaatgttacaatttagatagaa 655
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 858
Length adjustment: 10
Effective length of query: 447
Effective length of database: 848
Effective search space: 379056
Effective search space used: 379056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
