BAC Information

Click to search

BAC

Clone NameMSMg01-090F03
Chromosome4 (Build37)
Map Location 71,141,776 - 71,142,085
singlet/doubletsinglet
Overlap genenone
Upstream geneMegf9, LOC100039565, LOC100039979
Downstream geneLOC667638, EG667649, Tle1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-090F03.T7 (MSMg01no090_f03.b1)MSMg01-090F03.TJ (MSMg01no090_f03.g1)
ACCAG308585AG308586
length738565
length of high quality
(start - end)
316 (45 - 360)---
definitionCHROMAT_FILE: MSMg01no090_f03.b1 PHD_FILE: MSMg01no090_f03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:27 2005CHROMAT_FILE: MSMg01no090_f03.g1 PHD_FILE: MSMg01no090_f03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAAGAGACTTCCGGTTTAGGACAATGATGTTTTCAGACCTGTAAAA
GGACATTGTAAAAGTTGAGAGTAAGATTCCAGAGTTACTCTTCTGTGGAC
AGAATTTCTTCCTGAAATTCACAGGAAACAGCTGCCCCTGAGTTAGACAT
TTTGATAGGTAGCTTATAATGTAGATAAATGTGAGGACCAGGATGTTGCC
GGCCCAATTAAATTGGTTCGAGCTGTATCTGTTTAGTCTCCTAAATAGCC
ATACATTGCCTTGAAGGTAATAGTATGATTTAAATACCACCTGGTTGTAG
ACTGATACATGTTTTTTATTTACCCCGATCGACCCCCGAGTTATACAAAA
TAAAAANTGAAATACCAGGTTCTCTTCATATAAAGAAAAGACTTAGGGAG
ATAACTGAGGATTCCACACTTATTAGAAAAGGCGGTCGCTAGTGTACCCA
ATTAAAGAACTATCCCTTCCAACCACCGGGTTAAAAACACATCAGTCATG
ATTTTAGCTTCCAGCAAACTTTGAGATGTATGTCCATGTTTGACGTTGCT
TACTGTCTTCCATCTTGGTCCCAACTCAAATTCTAATATTAATTCTCTTT
CTTGGTAAAATCTCCAGACTTGTCTGTTCAATTCAAATTTCTTAAGGACT
AAATATCTTTGGGCGGAACAAAAACTCTGCTTATTACT
CCCCCCCCCTCCCCCTTCGCTCTTTTTTTTTTTTTTTTTTTTTTTTACTT
TTTCTTTTTCTTTTTCTTTTTTTTTTCTTTTTTTTTTATTNTTACTTTCT
TAATATTATTTTCCTCTTTCTTTTCTCCCCCTCTTTCTCCCTCTCCTTTC
CCTTCCTATTTCTTTTTTTTACTCCCCCTTCTCCTATGCGGCGGAGACGC
CGGAGAGACTAACCCGGGAGCGCACGGCGGGGGAGGGCGCGTGGGCGCTC
CACCGGCCCCTTTATTGTCGTACCGGTGCTGTGCGCTCGGTCCCACCTTT
GTTGAGTCGTGGCTCTTAAAACTTTCAACCATCCACCACCCAATATAATC
CAACTCTCTCTTCCCACTCCCTCCAGCCGGACCGAAGAAAAGTACCCCGT
CTAACATNNNNCCCTCTATTATNTGCCTTAGCCCTAGCAATCGCCTTGAT
CGTTCCCACATGACCGTTNAGCTATAGCATGTTATCCTGCACGACTCAGT
AGATTTTAGCCTGCCTTAGGGCGTCGTAGTCCACTTAGCCCTTTACTGAT
GAATTAACTTTAGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no090_f03.b1 MSMg01no090_f03.b1 CHROMAT_FILE:
MSMg01no090_f03.b1 PHD_FILE: MSMg01no090_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:27 2005
         (316 letters)



>mm_chr4_71141572_71142287
          Length = 716

 Score =  584 bits (302), Expect = e-171
 Identities = 308/310 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaaagagacttccggtttaggacaatgatgttttcagacctgtaaaaggacattg 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gaattcaaagagacttcaggtttaggacaatgatgttttcagacctgtaaaaggacattg 455

                                                                       
Query: 65  taaaagttgagagtaagattccagagttactcttctgtggacagaatttcttcctgaaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 taaaagttgagagtaagattccagagttactcttctgtggacagaatttcttcctgaaat 395

                                                                       
Query: 125 tcacaggaaacagctgcccctgagttagacattttgataggtagcttataatgtagataa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tcacaggaaacagctgcccctgagttagacattttgataggtagcttataatgtagataa 335

                                                                       
Query: 185 atgtgaggaccaggatgttgccggcccaattaaattggttcgagctgtatctgtttagtc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 atgtgaggaccaggatgttgccggcccaattaaattggttcgagctgtatctgtttagtc 275

                                                                       
Query: 245 tcctaaatagccatacattgccttgaaggtaatagtatgatttaaataccacctggttgt 304
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 274 tcctaaatagccatacattgccttgaaggtaataggatgatttaaataccacctggttgt 215

                     
Query: 305 agactgatac 314
           ||||||||||
Sbjct: 214 agactgatac 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)