BAC Information

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BAC

Clone NameMSMg01-090H19
Chromosome4 (Build37)
Map Location 92,461,767 - 92,462,056
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC620016, LOC654475, 4930577H14Rik, LOC664886, 1700011H22Rik, LOC68280
Downstream geneLOC620269, LOC384125, Tusc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-090H19.T7 (MSMg01no090_h19.b1)MSMg01-090H19.TJ (MSMg01no090_h19.g1)
ACCAG308704AG308705
length723715
length of high quality
(start - end)
326 (51 - 376)290 (75 - 364)
definitionCHROMAT_FILE: MSMg01no090_h19.b1 PHD_FILE: MSMg01no090_h19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:40 2005CHROMAT_FILE: MSMg01no090_h19.g1 PHD_FILE: MSMg01no090_h19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTTATATATTCTCTGATATTAGCTCCCTATTGGATGTGGG
CTTAATATAGACATTTTTCCATCTGTAGGTTCTTGTTTTCTTCGAGACAG
GGTTCGTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTATACCAGG
CTGGCCTCAAACTCAGAAATTCGACTGCCTCTGCCTACCAAGTGCTGGGA
TTAAATGTGTGCATCACCACTGCCTGGCTCAAAGAGTTATTGATATCCTC
CTTAAAGAACTCTATTATCTTAATAAGATAGGATTTTAGGACAGATTCAT
GATTTTCAGTTGTGTTGTTATATTCAGCCCTCGCTGTGGTAGGAGAACTG
GTTTCTGATGATGCCCATGTATTTTTTGACTTCTGTTGCTTATGTTCTTC
TGCTTGCCTTTCTCCATCTGGATATCCCTGCTGTTTGTTCATCTGGGTGA
CTGTATGGAATTTGCCTCTTTTGTCCTTGGTTTGCTTCACGTCTCTAGGT
AGGCCTGCAGCCCTGTCTGTATCAAATCACCAATGAGGCCTTCCAACTGG
CCTTTCTTCATGGTCCAGACAATCTGCTTTATCCTTGTCCCAGGATTTCT
TTTGAACAGTAATTATTTCTATGTTCAAATTCTTTGAAATGGCCGAGTAC
CACCTCTCCCCCCTATTTATTCT
ATCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACGACTAAACCCCGAATCCCAGTTAA
CACAGAGAGACACAATTCAGGCTTATTTAGCTTCAGTCCTTCATATAGAA
ACCTTTGGGCTGCCTCTTTATCTTCTCTACAACCTTCTTTGCACCCACCT
GATCATGCACTTCAACACACGGCACAAACTCCCACACTCAAACTTAAATC
TTACTTCACCCACATAAAATGGTTTTTAAAATTCATTCCCGTGTTCTTAA
AAAATGGTTACTATATGATTTTTTTTCTATTAGTTGCATGTTTGGCTTTG
ATTATTTTCTTGCACGCCCCACCCCATTAATCCACTTATGTAATAAAATT
ATGTGTTAAAATTTTATTCTCTGGCCAGGGAAATATCTCTGCGTATAAGG
GCACAAATTGTCAAGTGGGGCATCCTGAGTTCAACCCCTCAGGAACCATG
AAATGATAGGAAATACTTGCTTTCTTTTGTCCTCTGATGTCTATGCAATT
CCCAGCGACCCCAACAATGAGCGAATGAATGAATGAATAAATAAATAAAT
AAATAAATAAATACGTAAAAATAAATTTATAATGTTGTTTTTGCTACAAA
AATTTAAAGGATAATATTTTATTATCCCCAGCATTCTGTGGAAAAATGTA
CAAATACATAATAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no090_h19.g1 MSMg01no090_h19.g1 CHROMAT_FILE:
MSMg01no090_h19.g1 PHD_FILE: MSMg01no090_h19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:40 2005
         (290 letters)



>mm_chr4_92461564_92462256
          Length = 693

 Score =  455 bits (235), Expect = e-132
 Identities = 277/293 (94%), Gaps = 9/293 (3%)
 Strand = Plus / Plus

                                                                       
Query: 4   actaaaccccgaatcc-cagttaacacagagagacac-aattcaggcttatttagcttca 61
           |||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 204 actaaaccccgaatccacagttaacacagagagacacaaatccaggcttatttagcttca 263

                                                                       
Query: 62  gtccttcatatagaaacctttgggctgcctctttatcttctctacaaccttctttgcacc 121
           ||||| |||||||| ||||||||||||||||  |||||||||||||||| ||||||||||
Sbjct: 264 gtcctacatatagatacctttgggctgcctc--tatcttctctacaaccgtctttgcacc 321

                                                                       
Query: 122 cacctgatcatgcacttcaacacacggcacaaactcccacactcaaact-taaatcttac 180
           ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 322 cacctgatcatgcacttcaacacacggcacaaactcccacactcaaa-tgtaaatcttac 380

                                                                       
Query: 181 ttcacccacataaaatggtttttaaaattcattcccgtgttcttaaaaaatggttactat 240
           |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 381 ttcacccacataaaatggtttttaaaattcattcccatgttcttaaaaaatggttattat 440

                                                                
Query: 241 atgattttttttctattagttgcatgttt---ggctttgattattttcttgca 290
           ||||||| |||||||||||||||||||||   |||||||||||||||||||||
Sbjct: 441 atgatttgttttctattagttgcatgtttatgggctttgattattttcttgca 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 693
Length adjustment: 9
Effective length of query: 281
Effective length of database: 684
Effective search space:   192204
Effective search space used:   192204
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)