Query= MSMg01no090_p14.b1 MSMg01no090_p14.b1 CHROMAT_FILE:
MSMg01no090_p14.b1 PHD_FILE: MSMg01no090_p14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:44:19 2005
(615 letters)
>mm_chr4_92951354_92952372
Length = 1019
Score = 1108 bits (573), Expect = 0.0
Identities = 600/611 (98%), Gaps = 4/611 (0%)
Strand = Plus / Plus
Query: 7 aattgatggctgtgagcatccacttctgtatttgtcaggcactggcagagcctctcagga 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 aattgatggctgtgagcatccacttctgtatttgtcaggcactggcagagcctctcagga 266
Query: 67 gacagctacatcacgctcctgtcagcacttgttggcatccacagtagggtctggatttgg 126
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 gacagctacatcaggctgctgtcagcacttgttggcatccacagtagggtctggatttgg 326
Query: 127 taactgcttttttaggcaagagtccccattgtaagccacttaatatgaattgctaacagt 186
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 327 taactgcttttttaggcaagagtccccattgtgagccacttaatatgaattgctaacagt 386
Query: 187 ctattacaagttgattcaagtgtgcaaatagaagatctatttcttcaaaatatctttata 246
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ttattacaagttgattcaagtgtgcaaatagaagatctatttcttcaaaatatctttata 446
Query: 247 aaattaaattctggtcttgctgtatatttgtgtaaaatattagtttagaaaacttttatg 306
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 447 aaattaaattctggtcttgctgtatatttgtgtaaaatattagtttagaaagcttttatg 506
Query: 307 tcagtggctacatttcagtttgtacatttttgtcatttctatatacctataattctctta 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tcagtggctacatttcagtttgtacatttttgtcatttctatatacctataattctctta 566
Query: 367 ggaaggtttattctaaaatttacccatttggctatgattttacttacatgaaatttagac 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ggaaggtttattctaaaatttacccatttggctatgattttacttacatgaaatttagac 626
Query: 427 actcatttctgtaagaggtcatcttttacactaaatagaattcgttcctgattttaagca 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 actcatttctgtaagaggtcatcttttacactaaatagaattcgttcctgattttaagca 686
Query: 487 aactactgtagccaacgccatatcttataacagtttacacataaaaaaaa----tctcta 542
||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 687 aactactgtagccaaagccatatcttataacagtttacacacaaaaaaaaaaaatctcta 746
Query: 543 aaacatctgtctctgtagttcagctagatccaagccatgacctgtctctattctagttca 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 aaacatctgtctctgtagttcagctagatccaagccatgacctgtctctattctagttca 806
Query: 603 aatcccacggt 613
|||||||||||
Sbjct: 807 aatcccacggt 817
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1019
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1009
Effective search space: 610445
Effective search space used: 610445
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no090_p14.g1 MSMg01no090_p14.g1 CHROMAT_FILE:
MSMg01no090_p14.g1 PHD_FILE: MSMg01no090_p14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:44:19 2005
(291 letters)
>mm_chr4_93010937_93011627
Length = 691
Score = 538 bits (278), Expect = e-157
Identities = 287/290 (98%)
Strand = Plus / Minus
Query: 1 tgaggagttcagtgaggcccactgaggtaaggtcaagaggcttgaacaaagatctcctgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 tgaggagttcagtgaggcccactgaggtaaggtcaagaggcttgaacaaagatctcctgc 431
Query: 61 tcccactgggctattgaaaataaaaagaaaagggtagaaatgtaagaggaacttagtcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tcccactgggctattgaaaataaaaagaaaagggtagaaatgtaagaggaacttagtcaa 371
Query: 121 gcaggcccaaccacagttctggcttatgtaccaatgtactcctgatagttcctccctgag 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 370 gcaggcccaaccacagttctggcttatgtaccaatgtactcctgatatttcctccctgag 311
Query: 181 ccaaactacaatatgccagcacagatagcgaccactgatgctggagaagacaatggagtg 240
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 310 ccaaactacaatatgccagcatagatagcgaccgctgatgctggagaagacaatggagtg 251
Query: 241 agccattgagaaaaagacagcatcatatctggctacttgagagccaataa 290
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 agccattgagaaaaagacagcatcatatctggctacttgagagccaataa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space: 192324
Effective search space used: 192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
