BAC Information

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BAC

Clone NameMSMg01-091B17
Chromosome4 (Build37)
Map Location 82,876,875 - 82,979,909
singlet/doubletdoublet
Overlap gene1810054D07Rik
Upstream geneNfib, Zdhhc21, Cer1, Frem1, LOC667985
Downstream geneSnapc3, Psip1, LOC100040611, 4930473A06Rik, LOC668010, Bnc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-091B17.T7 (MSMg01no091_b17.b1)MSMg01-091B17.TJ (MSMg01no091_b17.g1)
ACCAG309152AG309153
length705708
length of high quality
(start - end)
235 (123 - 357)306 (128 - 433)
definitionCHROMAT_FILE: MSMg01no091_b17.b1 PHD_FILE: MSMg01no091_b17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:30 2005CHROMAT_FILE: MSMg01no091_b17.g1 PHD_FILE: MSMg01no091_b17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,876,875 - 82,877,109)(82,979,604 - 82,979,909)
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTCTTATCGCAGAGACTGGGTGGCTAGTAGTCTTGTTTCAGCATCA
TTATGAAAACTATTTGCCCCCGAAAAAGGTTGAGTTAACAACAGTGTTTT
AAATCTAGAGCGAACTGTTTCTGTAGTTCAAACTATAATGGATTTTTTCA
CTTTTGGTGGCAGATACATGCATACAAATATACTCATTATCAAAAATACA
AAATGTGGGCTGGAGAGATGGCTCAGCAGTTAGGAGCACTGCCTGCTCTT
CCAGAGCTCCTGAGTTCAATTTCCAGAAACCACATGGTGGCTCACAACCA
TCTGTAATGTTATCTGACGCCCTCTTCTGGCGTGTCTGAAGACAGCTACA
GTGTACTTGAATACATAAAATAAATAACTCTTTTTTTAATAGTACAAAAT
GCAATGTGATACTCTACAGTTTCCATTCTGAATGGCTACTCTGTTTGCTG
ACTTGTCTAATTCTGTGTCTAATTCAGCTTATCACGCTATAAACCAAACT
ACTCTCACATGCCAAAAAACTAACAGGAGATCGCTGCGCGCACCGATATA
TGCTTATGCCCAGACCTTACACTTGTGTCTTGGCGCCCACGTCGAAAATG
AATACCTAAATCCCCCCACAGCTTATGCCTGCCCCCTCCCCTCTGTATAT
AACTC
NTCTCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCTGGGGCTACCCAA
AGAGACCCTGTCTCAAACAACAACACAAGTTTATGAAAATGAAATGGTTT
TACTGAATCGCATCAGAAATGACACAGTTTTACCACTTGGACTGTTTCTC
CAATTTTGGAAGAACATCAAAGAGGATGCTGTACACTGGATAACTTATAA
ACAATAGAAATCATTCATCAATATTTTAAGGACTGGGTGATGTCTCATGT
CTGTAATTCCGGCTCTTGGCTGTTGTAATTCCAGAAATGGCATGAGACCA
GGCTTGACTAAGTAGGCTATCCAGGGCTATGTTGAGACACTGTCTCACCT
CCTGCCTCTCCCCACCCCCAAAGAAATTGTAGACGCTGGCAAGTCCACAA
TCAAGGTGTTAGAATATATGTTGTCTGACACTCACACTTCAATCCTTGCT
CCAGCTTCACAACCTCCCTACTGAACGTGGTAATCACACCCCGAGGGGAG
TCCTCATCACTAATCTTTTCCTAAAACGACCCACGTCTCACCATCTCTAG
GAAGAGCATTACATTTCCACACTAAACGTCTGCCCGGTTCGCATCATTAG
TCTGTCCATCTTCCCATATTAAAACCTTCCCCTCACTTGGACACTTGACC
CCCCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no091_b17.b1 MSMg01no091_b17.b1 CHROMAT_FILE:
MSMg01no091_b17.b1 PHD_FILE: MSMg01no091_b17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:44:30 2005
         (235 letters)



>mm_chr4_82876675_82877309
          Length = 635

 Score =  447 bits (231), Expect = e-130
 Identities = 234/235 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaaaggttgagttaacaacagtgttttaaatctagagcgaactgtttctgtagttcaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaaaggttgagttaacaacagtgttttaaatctagagcgaactgtttctgtagttcaaa 260

                                                                       
Query: 61  ctataatggattttttcacttttggtggcagatacatgcatacaaatatactcattatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctataatggattttttcacttttggtggcagatacatgcatacaaatatactcattatca 320

                                                                       
Query: 121 aaaatacaaaatgtgggctggagagatggctcagcagttaggagcactgcctgctcttcc 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaatacaaaatgtgggctgaagagatggctcagcagttaggagcactgcctgctcttcc 380

                                                                  
Query: 181 agagctcctgagttcaatttccagaaaccacatggtggctcacaaccatctgtaa 235
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agagctcctgagttcaatttccagaaaccacatggtggctcacaaccatctgtaa 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no091_b17.g1 MSMg01no091_b17.g1 CHROMAT_FILE:
MSMg01no091_b17.g1 PHD_FILE: MSMg01no091_b17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:44:30 2005
         (306 letters)



>mm_chr4_82979404_82980109
          Length = 706

 Score =  569 bits (294), Expect = e-166
 Identities = 303/306 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtttatgaaaatgaaatggttttactgaatcgcatcagaaatgacacagttttaccact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 506 agtttatgaaaatgaaatggttttactgaatcgcatcagaaatgacacagtcttaccact 447

                                                                       
Query: 61  tggactgtttctccaattttggaagaacatcaaagaggatgctgtacactggataactta 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tggactgtttctcctattttggaagaacatcaaagaggatgctgtacactggataactta 387

                                                                       
Query: 121 taaacaatagaaatcattcatcaatattttaaggactgggtgatgtctcatgtctgtaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 taaacaatagaaatcattcatcaatattttaaggactgggtgatgtctcatgtctgtaat 327

                                                                       
Query: 181 tccggctcttggctgttgtaattccagaaatggcatgagaccaggcttgactaagtaggc 240
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tccggctcttgggtgttgtaattccagaaatggcatgagaccaggcttgactaagtaggc 267

                                                                       
Query: 241 tatccagggctatgttgagacactgtctcacctcctgcctctccccacccccaaagaaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tatccagggctatgttgagacactgtctcacctcctgcctctccccacccccaaagaaat 207

                 
Query: 301 tgtaga 306
           ||||||
Sbjct: 206 tgtaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 706
Length adjustment: 9
Effective length of query: 297
Effective length of database: 697
Effective search space:   207009
Effective search space used:   207009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)