BAC Information

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BAC

Clone NameMSMg01-091H01
Chromosome4 (Build37)
Map Location 132,657,860 - 132,658,056
singlet/doubletsinglet
Overlap genenone
Upstream geneOprd1, LOC664894, Ythdf2, LOC664903, Gmeb1, Rnu11, Taf12, 9530096D07Rik, LOC100039864, Trspap1, Rcc1, Snhg3, Phactr4, Med18, Sesn2, Atpif1, Dnajc8, Ptafr, Eya3, Xkr8, Smpdl3b, Rpa2, BC013712, LOC100039917, Ppp1r8, Stx12, OTTMUSG00000010099, BC008163, Fgr, Ahdc1, LOC100041932
Downstream geneWasf2, Gpr3, Cd164l2, Fcnc-ps, Map3k6, Sytl1, D4Ertd196e, LOC100041990, LOC100042018, Wdtc1, Slc9a1, 4732473B16Rik, 2300002D11Rik, 1810019J16Rik, Nudc, Nr0b2, Gpatch3, Atpbd1b, Sfn, Zdhhc18, LOC545683, Pigv, Arid1a, Rps6ka1, 4930429E23Rik, LOC100042151, Hmgn2, Dhdds, Lin28, Aim1l, Cd52
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-091H01.T7 (MSMg01no091_h01.b1)MSMg01-091H01.TJ (MSMg01no091_h01.g1)
ACCAG309391AG309392
length710747
length of high quality
(start - end)
204 (48 - 251)77 (82 - 158)
definitionCHROMAT_FILE: MSMg01no091_h01.b1 PHD_FILE: MSMg01no091_h01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:57 2005CHROMAT_FILE: MSMg01no091_h01.g1 PHD_FILE: MSMg01no091_h01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCGCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATCCTCCTCCTGCCCCAGCTTCCCAACGACTGAGGAGAAGATA
GGCCTGTGGCACACATTGCCCACCGCTCTCGCCTTATATTTATTTAACAT
ATCCACCTCCCAAGACGGGCAGGTTGCCTTTCTCCACCAAAAGAAGCAGA
GAACTCGCTTGCTACCTTGACCTTGTCGGTCTGGCAGACTCCTTGACCTG
TAGGAGGATGCTCAGAGACCATCTGCGTAAGACGTGTGCTTCAGTTAGCC
GTAGCGCTTGCCTACCATGCACGATTCCCATAGCTGAACCACCATGGAAA
CTGCCCATGCCTGAGTTCTTGTTTAGTCTCACGACTTTATCCTAAACGCG
CCTATTTAGCCCCTATTCCACACCCTGTGCCCACCCATCGTCCCCACCTG
CATTTCCCGGACTGCGCGCTACACCCCGTCACACTCGAGCTTCCCCCTTC
CCCTTACTCTCCCCCCCACTTACCTCCTCCCCCATCCATACCTCACCCCC
CTCCCCCCTGTTTTTCCCCCCCTTCTTCCCTCCCCCCCTCCCTTTATTTC
CTTCCCCCACCTTTTCCCCTTCATTTCTCTCATCCCCCCCCCTTCCTTCC
CTCACCCAGTTTCCTTCCCCCTATCTCTTGTCCTCCCTCCCCCCCTTCCT
ATATATTCTT
TAAGTACGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTCTGTAGACCAGGCAGG
CCTCACACTCAGAGATCTGCCTGCCTCTGCCTCCTTCCCGAGTGCTGGAA
TTAAAGGTGTGTGCCATCAGCACCCAGCCAAGTTGATTCCTTTCTGTCGG
ACTTACTTGGGGCTGGAGTTCAGATCTGTGGTACAGTGTATGACTGACAC
GTACTACGTTGAAATCCTATCATCAGAACAAGACCCCTCATTCTGAACAA
ATCCCCGTTTCACAGTGTCACTTAGTGCTGTTTTCCATGACTTGTGCGGC
TCACTTTATGACTTTATCTTGTACCACCAGTTCACTCGATTTCTACCCCC
TGTTATACTTCCTCGCCTGTTGATTCCGTGCTTGTCTCTTTCATCTTATG
CCTTTCGTGGCTTATGTTCTCATCCTTTGTAACCCCTGATTCTAGCATCT
TAGCCCCTTTATATTGTTGTCTCTCGTTACAGCCACCTCCCATTTTCTTT
GTTTCCCTGTTTTCCTTCTTTTACTCCACCTTTCTTTCTTCCCCACTTTT
CCCCTTTCCCCCCTTTCCCCTTATTATCCCGCCCATACAAACTCACCTAT
TTCATTATTCCCCCTATCCCCCATTCTTTCCCTTATCCCTCATCCCCCTA
TTTTATCCCCCCGTCCTTACCTCTTACTCCACCTTCCTCCCCCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no091_h01.b1 MSMg01no091_h01.b1 CHROMAT_FILE:
MSMg01no091_h01.b1 PHD_FILE: MSMg01no091_h01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:44:57 2005
         (204 letters)



>mm_chr4_132657656_132658259
          Length = 604

 Score =  366 bits (189), Expect = e-106
 Identities = 195/197 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatcctcctcctgccccagcttcccaacgactgaggagaagataggcctgtggca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 gaattcatcctcctcctgccccagcttcccaacgactgaggagaagataggcctgtggca 342

                                                                       
Query: 65  cacattgcccaccgctctcgccttatatttatttaacatatccacctcccaagacgggca 124
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 cacattgcccaaagctctcgccttatatttatttaacatatccacctcccaagacgggca 282

                                                                       
Query: 125 ggttgcctttctccaccaaaagaagcagagaactcgcttgctaccttgaccttgtcggtc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 ggttgcctttctccaccaaaagaagcagagaactcgcttgctaccttgaccttgtcggtc 222

                            
Query: 185 tggcagactccttgacc 201
           |||||||||||||||||
Sbjct: 221 tggcagactccttgacc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 204
Length of database: 604
Length adjustment: 8
Effective length of query: 196
Effective length of database: 596
Effective search space:   116816
Effective search space used:   116816
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)