BAC Information

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BAC

Clone NameMSMg01-091O12
Chromosome4 (Build37)
Map Location 117,134,249 - 117,134,544
singlet/doubletsinglet
Overlap gene4931406I20Rik
Upstream geneMast2, Ipp, Tmem69, Gpbp1l1, LOC622665, Nasp, Akr1a4, Prdx1, Mmachc, 0610037D15Rik, Tesk2, Toe1, Mutyh, Hpdl, LOC625336, LOC100041048, Zswim5, Urod, Hectd3, Eif2b3, Ptch2, 9530048O09Rik, LOC100041324, 4833401D15Rik, Plk3, Best4-ps, LOC625405, Rps8, Kif2c, Gm1661, Tmem53
Downstream geneLOC100041093, Prnpip1, Dmap1, LOC433749, Klf17, Ppia-ps4_1138.1, Slc6a9, B4galt2, Atp6v0b, Dph2, Ipo13, Artn, St3gal3, Jmjd2a, Ptprf, Hyi, BC059842, Med8, Elovl1, Cdc20, Mpl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-091O12.T7 (MSMg01no091_o12.b1)MSMg01-091O12.TJ (MSMg01no091_o12.g1)
ACCAG309727AG309728
length707705
length of high quality
(start - end)
299 (119 - 417)240 (75 - 314)
definitionCHROMAT_FILE: MSMg01no091_o12.b1 PHD_FILE: MSMg01no091_o12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:34 2005CHROMAT_FILE: MSMg01no091_o12.g1 PHD_FILE: MSMg01no091_o12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ACTATGTACATAGGCTGGTCTGGAATTCAGAGATCCTCCTGTCTCTGCCT
CCCAGGTGCTGGGACCATTGGTGTGTGCAACCATTCCTGCCAACATTTTT
AGTATTTTTAGATTTGGGTTCCTATGGGAAATGCTGCTGTTAGCATTTTA
AAATCCATTCTTATATTTAAGACAAGTTGCTTTATGGCCACATCAAGGAT
TAGGGTTTCTTCAACCTTACTGGCTAATGTTCAATTGCATTCAAAAGATG
TACTACCAGTTTTCTCCTTTATTTCTTTTTATCTTATACAGCAGTTGCTA
CATGATGGAGAACACAGACTGTCACAGTTGTTTCCTGCTTTTCCTTGAAT
ACCTCACCCCTTATCAGTACACAGTAATGGTACACTATCATGAATTTCTT
CATGACATTTTCATACAAGTACATGACGCACCATGATCATGTTCCTACCC
CTCCCCATTGTCCCTCTTGTCCTCTCTCTCTCTCTAAGCTTATCTTTCTA
GGAGCATCTTGTTGCCCTTATCATGTTGACTTCCAGCCCCTCTGCTTTCT
TGTGAATGTGTCATTCTTCCCCGCGGTTGAAAAGCTTCCCTGCGTTTCTG
CCCATTTTCTCACTCATTTTTCCGCCTGTTGCACCCTTCTCGATCCCTTA
CCTGCCC
ATACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCATATGAATTTACAAGTGTGAGGACA
TGAGTTCCTATCCCATGAACCCACAAAGCAGATGGGGGAGTAGTCACCTG
TGATCTCAGCACTGAGGAGATGGGAGGTAGAGATGGGCAACACCTGGAAG
CTCACTGGACAGCCGACCTGGTATACACAGCAGCAAACAAGAGTCCCTTT
TTCAAACAGGCGGAAGGTGGGACCCACACCTGTCTTTTAATCTCTACATA
GGAGCGATTGTGTGCGCACTCTTGCACACGCACTCGCATACACATGCATA
CACGTATGTGTACAAGCACACATAAGATAAAGACCTGCTGTGCATCATGG
CTGGGACTCACTGCTACTTGCAGGACTTGCGCATGGCGTGTACTCATAAT
ATCAAAAAGAAAAACTCAGACTAGGGAAATTTTTCTTTTAGTTTGGTGAC
TGGATGCGGAACTGGCTTCCCAGCATGATCCCTGGCTATGTCCATATCCA
GGCTTGACGACCTGTCTGACCACCATCCACTTTGCCCCCCCTGACTGTCC
CACTGCATTGTCTGCACACCACTCATCTCTGTCAGGAAGCCCCTTTCTCT
TTTCTCTCTTCCTCTCTCCTTCTCTTTCTTTTATCTTTCCTCTCTATCTG
CCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no091_o12.b1 MSMg01no091_o12.b1 CHROMAT_FILE:
MSMg01no091_o12.b1 PHD_FILE: MSMg01no091_o12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:34 2005
         (299 letters)



>mm_chr4_117134049_117134747
          Length = 699

 Score =  549 bits (284), Expect = e-161
 Identities = 293/296 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggtgtgtgcaaccattcctgccaacatttttagtatttttagatttgggttcctatggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 tggtgtgtgcaaccattcctgccaacatttttagtatttttagatttgggttcctatggg 437

                                                                       
Query: 61  aaatgctgctgttagcattttaaaatccattcttatatttaagacaagttgctttatggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 aaatgctgctgttagcattttaaaatccattcttatatttaagacaagttgctttatggc 377

                                                                       
Query: 121 cacatcaaggattagggtttcttcaaccttactggctaatgttcaattgcattcaaaaga 180
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 cacatcaaggactagggtttcttcaaccttactggctaatgttcaattgcattcaaaaga 317

                                                                       
Query: 181 tgtactaccagttttctcctttatttctttttatcttatacagcagttgctacatgatgg 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 316 tgtactaccagttttctcctttatttctttttaccttatacagcagttgctacatgatgg 257

                                                                   
Query: 241 agaacacagactgtcacagttgtttcctgcttttccttgaatacctcaccccttat 296
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 agaatacagactgtcacagttgtttcctgcttttccttgaatacctcaccccttat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 699
Length adjustment: 9
Effective length of query: 290
Effective length of database: 690
Effective search space:   200100
Effective search space used:   200100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)