ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CTTCCCTAAGGAGTTTGGGTCAGGGATTTGGTAACAGCTTTGTGAAAGTG
AAGTGGGCGTTAGAAATGTGGATGCTCTCTCTCTGGGGACCACGCTTTCA
GAAACACTGTGCAGAAAATGGCTTTCTTCTTCACCACCATCAGTCGGCTT
CTGTCAGATGAATCTCTTTTATATACCCTGTACTGGGCAACGATGCAGGG
CTCCTTGTTTGCCCTAAGCCAAAATCAGAGAAGCCCCTCTTCGTCTAAGA
TGCATAGGAAGCACGTGGCTTGTTACACTGCCAGCATGGAGCCAGGGCCC
AAGGTGATCCCAAGCTTCTATATTTCGTACAAGTTCCTATGCAGTGCCAG
CGCTCTGCACCAGGAGTTGGCAAACTTCCTCCGTGTAGGACCAGATAGTA
AACCTTTAGGCATCACAGGTCATGAAATCTCTGCTGTGACTACGCAACTC
TGATCTTATATCCCAACCGCAGCCCTACTCAATGCAGTCATGGCTGTGCG
CCAATAAAAACTTTGCTTACAAAAGCCGGTTGAAAAGGTGGGAATTTCCC
AAATGGGGAATAGCTGGCCAATTCTGATTATAGAGATTTGAGGGAACAAA
TCCGTGTGCCTTTGCTGTGCCAACACGAGTTGCCTTAGCTTAAGAATATG
TATGCAAA

GATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXATTACGTAGACCAGGCTGGCCTTGAATAATAA
ACAGTAATTCTTCTGCCTCTGCTCCTTGAATGCTGGAATTATGAGCTTAG
GTCATCACACCAGGCTGGTGACCAATTTTTGTTGTTAACTACATGACAGC
AATCCTCAAATTCAGAGGACATGACATTGGTGTGGAGGGCCAATGTCTTA
GTTCAAGACTCTATCTTCTACCGACCCTAGACAAAAAGCTTGATTTCTGT
AATTCCTGATGCTTTTTTTCCATTTCAAAATGATCAGATGGTCACTCTTG
AGGCTAGCCACACGATGGATGCTCAAGGAAGCAACAACATCAAGTCCCTA
CCTTATGCACGATGATGTATGAGGCTGAGGTTTTTTAGGGACAGCTGGTA
GGATGATAACTGAGTCCTTATTTAGTATGATAGAGAGGGAAAAGAAAATA
TGATTTTTTTTTTTCTTCTTCGAAACAGGGTTTCTTTATGAACCCCTGGT
CTGTCCTGTAACTCACTCTGTACACCAGGCTGTCCTCCAACTCCTAAATC
CACCAGCCCCTGCCTTCTCTGTGTTGGGAATAAAGGTTGGTATCCCCTCC
TGTCTGGCTTGTCCTGATACTCTTTAATAAACGGTTCTCTTTCTCCCTGT
TTGCTTTT

Query= MSMg01no092_c10.b1 MSMg01no092_c10.b1 CHROMAT_FILE:
MSMg01no092_c10.b1 PHD_FILE: MSMg01no092_c10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:54 2005
         (464 letters)



>mm_chr4_55140477_55141340
          Length = 864

 Score =  882 bits (456), Expect = 0.0
 Identities = 459/460 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccttccctaaggagtttgggtcagggatttggtaacagctttgtgaaagtgaagt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttccctaaggagtttgggtcagggatttggtaacagctttgtgaaagtgaagt 264

                                                                       
Query: 65  gggcgttagaaatgtggatgctctctctctggggaccacgctttcagaaacactgtgcag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gggcgttagaaatgtggatgctctctctctggggaccacgctttcagaaacactgtgcag 324

                                                                       
Query: 125 aaaatggctttcttcttcaccaccatcagtcggcttctgtcagatgaatctcttttatat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaaatggctttcttcttcaccaccatcagtcggcttctgtcagatgaatctcttttatat 384

                                                                       
Query: 185 accctgtactgggcaacgatgcagggctccttgtttgccctaagccaaaatcagagaagc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 accctgtactgggcaacgatgcagggctccttgtttgccctaagccaaaatcagagaagc 444

                                                                       
Query: 245 ccctcttcgtctaagatgcataggaagcacgtggcttgttacactgccagcatggagcca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccctcttcgtctaagatgcataggaagcacgtggcttgttacactgccagcatggagcca 504

                                                                       
Query: 305 gggcccaaggtgatcccaagcttctatatttcgtacaagttcctatgcagtgccagcgct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gggcccaaggtgatcccaagcttctatatttcgtacaagttcctatgcagtgccagcgct 564

                                                                       
Query: 365 ctgcaccaggagttggcaaacttcctccgtgtaggaccagatagtaaacctttaggcatc 424
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctgcagcaggagttggcaaacttcctccgtgtaggaccagatagtaaacctttaggcatc 624

                                                   
Query: 425 acaggtcatgaaatctctgctgtgactacgcaactctgat 464
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 acaggtcatgaaatctctgctgtgactacgcaactctgat 664


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space:   387716
Effective search space used:   387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no092_c10.g1 MSMg01no092_c10.g1 CHROMAT_FILE:
MSMg01no092_c10.g1 PHD_FILE: MSMg01no092_c10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:54 2005
         (417 letters)



>mm_chr4_55193719_55194535
          Length = 817

 Score =  791 bits (409), Expect = 0.0
 Identities = 415/417 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attacgtagaccaggctggccttgaataataaacagtaattcttctgcctctgctccttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 attacgtagaccaggctggccttgaataataaacagtaattcttctgcctctgctccttg 656

                                                                       
Query: 61  aatgctggaattatgagcttaggtcatcacaccaggctggtgaccaatttttgttgttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 aatgctggaattatgagcttaggtcatcacaccaggctggtgaccaatttttgttgttaa 596

                                                                       
Query: 121 ctacatgacagcaatcctcaaattcagaggacatgacattggtgtggagggccaatgtct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 ctacatgacagcaatcctcaaattcagaggacatgacattggtgtggagggccaatgtct 536

                                                                       
Query: 181 tagttcaagactctatcttctaccgaccctagacaaaaagcttgatttctgtaattcctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 tagttcaagactctatcttctaccgaccctagacaaaaagcttgatttctgtaattcctg 476

                                                                       
Query: 241 atgctttttttccatttcaaaatgatcagatggtcactcttgaggctagccacacgatgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 atgctttttttccatttcaaaatgatcagatggtcactcttgaggctagccacacgatgg 416

                                                                       
Query: 301 atgctcaaggaagcaacaacatcaagtccctaccttatgcacgatgatgtatgaggctga 360
           ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 415 atgctcaaggaagcaacaacatcaagtccctaccttatgtaggatgatgtatgaggctga 356

                                                                    
Query: 361 ggttttttagggacagctggtaggatgataactgagtccttatttagtatgatagag 417
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 ggttttttagggacagctggtaggatgataactgagtccttatttagtatgatagag 299


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 817
Length adjustment: 9
Effective length of query: 408
Effective length of database: 808
Effective search space:   329664
Effective search space used:   329664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)