Query= MSMg01no092_e01.b1 MSMg01no092_e01.b1 CHROMAT_FILE:
MSMg01no092_e01.b1 PHD_FILE: MSMg01no092_e01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:03 2005
(526 letters)
>mm_chr4_28904010_28904932
Length = 923
Score = 920 bits (476), Expect = 0.0
Identities = 510/522 (97%), Gaps = 3/522 (0%)
Strand = Plus / Plus
Query: 5 gaattctagaggaaggagtggcttctagaagtggacttctttggttctgcctttgggccc 64
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 205 gaattctagaggaaagagtggcttctagaagt-gacttctttggttctgcctttgggccc 263
Query: 65 aaaagtgaataaacttaactgcatagatgcagaagagaaaaaggcacactgtgctcttaa 124
|||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 264 aaaagtaaataaacttaactgcatagatgcagaagag--aaaggcacattgtgctcttaa 321
Query: 125 agcatctgtctttcacaaaatattactttaagaaaaaccttaaactttttgaagctgttt 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ggcatctgtctttcacaaaatattactttaagaaaaaccttaaactttttgaagctgttt 381
Query: 185 tattaccaagcaaacacctaaaccatgttgccttaaagtactgctttaaggggcaggttg 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 382 tattaccaagcaaacacctaaaccatgttgccttaaagtactgctttaaggggcaggtgg 441
Query: 245 aggtagaataaagaaaaagacaaaagacagagctctcctatcacattatctgctactgtg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 aggtagaataaagaaaaagacaaaagacagagctctcctatcacattatctgctactgtg 501
Query: 305 acaaaacatttactttcctcagttgaaacgaagtctttacacgatgtacagagtgcagag 364
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 502 acaaaacatttactttcctcagttgaaacgaagtctttacacgatatacagagtgcagag 561
Query: 365 catgtccttttcttgctctttcaaggtctttcatcagtgattttaaaaggactcctggca 424
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 562 catgtccttttcttactctttcaaggtctttcatcagtgatttaaaaaggactcctggca 621
Query: 425 gtggatgcaggtgccataataacagcatctcaacacggcacacaagacaccaactcatct 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gtggatgcaggtgccataataacagcatctcaacacggcacacaagacaccaactcatct 681
Query: 485 tttcccaagatgctgggagtgacatttccattctataccgtc 526
||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 682 tttcccaagatgccgggagtgacatttccattctataccgtc 723
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 923
Length adjustment: 10
Effective length of query: 516
Effective length of database: 913
Effective search space: 471108
Effective search space used: 471108
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no092_e01.g1 MSMg01no092_e01.g1 CHROMAT_FILE:
MSMg01no092_e01.g1 PHD_FILE: MSMg01no092_e01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:03 2005
(483 letters)
>mm_chr4_28947708_28948590
Length = 883
Score = 911 bits (471), Expect = 0.0
Identities = 480/483 (99%)
Strand = Plus / Minus
Query: 1 ttgatttactggtattaacttaaattttggcatctatattttgaaacttcagtatgacta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ttgatttactggtattaacttaaattttggcatctatattttgaaacttcagtatgacta 624
Query: 61 gattcctagctactttaagatcagagtgaaacatagtaaatgtaatatgtttttctctga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gattcctagctactttaagatcagagtgaaacatagtaaatgtaatatgtttttctctga 564
Query: 121 gttaatttacagaaacatgttggaaaatagaagtaaatgctgtcactgactctctgagag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gttaatttacagaaacatgttggaaaatagaagtaaatgctgtcactgactctctgagag 504
Query: 181 tatttacttgtaataatatcttccaggcctaagcatacttggagagaaggcctttaacta 240
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 503 tatttacttgtaataatatcttccaggcctaagcatacttggagagaagacctttaacta 444
Query: 241 tattaacatttgggtaatggttattaacctatacaatttattacatcttcttgtaccatt 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tattaacattagggtaatggttattaacctatacaatttattacatcttcttgtaccatt 384
Query: 301 atgggcattttagcgtatctcctaaacttattcatgtttacaagcttataactttaatat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 atgggcattttagcgtatctcctaaacttattcatgtttacaagcttataactttaatat 324
Query: 361 gtttattgttctatatctatttcacaagtgtttgtttctcctctttattcattatttggt 420
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 323 gtttattgttctatatctatttcacaagtgtttgtttctcctctttattcactatttggt 264
Query: 421 ctattaagtctgtttcatgaggggcttagtgtactaaatctgcttcatggggcattccat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ctattaagtctgtttcatgaggggcttagtgtactaaatctgcttcatggggcattccat 204
Query: 481 gga 483
|||
Sbjct: 203 gga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space: 412929
Effective search space used: 412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
