Query= MSMg01no092_h02.b1 MSMg01no092_h02.b1 CHROMAT_FILE:
MSMg01no092_h02.b1 PHD_FILE: MSMg01no092_h02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:18 2005
(508 letters)
>mm_chr4_141852302_141853209
Length = 908
Score = 911 bits (471), Expect = 0.0
Identities = 492/499 (98%)
Strand = Plus / Minus
Query: 9 tcaggaggtcacgaaggtcacagcaagttcaaggccagcctgggctccatagtgagagac 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tcaggaggtcacgaaggtcacagcaagttcaaggccagcctgggctccatagtgagagac 727
Query: 69 tctatctcagaacacacaacagcaaaactctgtactgactgtgtaatgagaagccaggga 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 tctatctcagaacacacaacagcaaaactctgtactgactgtgtaatgagaagccaggga 667
Query: 129 gtgaacactctgatatataaagaattcgatgttggaggtgggggactgtctgtctcccac 188
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 gcgaacactctgatatataaagaattcgatgttggaggtgggggactgtctgtctcccac 607
Query: 189 ccaaggtcagacccaccttcctccacaccaaacaccatccagagactccagaagcagcca 248
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 606 ccaaggtcagacccaccttcctccacaccaaacaccgtccagagactccagaagcagcca 547
Query: 249 actttttcaaagaattgtggatgcagctccttccagtatgaaaatagcttaccctgggac 308
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 546 actttttcaaagaattgtggatgcagctccttccagtatgaaaatagcttaccttgggac 487
Query: 309 gagagtggctaataagatggtaattagaattgcttattagaacctgtcttctaaggtttg 368
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 486 gagagtggctaataagatggtaattagaattgcttattaggacctgtcttctaaggtttg 427
Query: 369 cctgtgcttttaatagaatctacaacgtatctgcttaccaggtaagacagatcaccctgg 428
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 426 cctgtgcttttaatagaatctacaacgtatctgcttagcagggaagacagatcaccctgg 367
Query: 429 tctggtgtattttaaaaccaggtccttgctctctggctgccccttacgccccatcctccc 488
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 366 tctggtgtattttaaaaccaggtccttgctctctggctgccccttacgccccctcctccc 307
Query: 489 ccatctacaccatctgctg 507
|||||||||||||||||||
Sbjct: 306 ccatctacaccatctgctg 288
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space: 447204
Effective search space used: 447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no092_h02.g1 MSMg01no092_h02.g1 CHROMAT_FILE:
MSMg01no092_h02.g1 PHD_FILE: MSMg01no092_h02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:18 2005
(429 letters)
>mm_chr4_141715897_141716725
Length = 829
Score = 571 bits (295), Expect = e-167
Identities = 424/533 (79%), Gaps = 104/533 (19%)
Strand = Plus / Plus
Query: 1 ttgagcctcccagtgaacccagctgactctgtcttctcagcacccagcttggctgcacgg 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 ttgagcctcccagtgaacccagctgactctgtcttctcagcagccagcttggctgcacgg 260
Query: 61 cagctgatatcatcagggctgggtttctaggcctactgagctgaaagcttgcagggtgga 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagctgagatcatcagggctgggtttctaggcctactgagctgaaagcttgcagggtgga 320
Query: 121 gctgaggacacagccaggccagctctccaacatggcgcagcctgttaccagggaacctgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctgaggacacagccaggccagctctccaacatggcgcagcctgttaccagggaacctgc 380
Query: 181 cttaagaaattccaacatccaggaaggcacaatgacagagtgagcgaaggcccttgccag 240
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttaagaaattcaaacatccaggaaggcacaatgacagagtgagcgaaggcccttgccag 440
Query: 241 cccgcctgatgactcgagttt-----------------------gaa------------- 264
||||||||||||||| ||||| |||
Sbjct: 441 cccgcctgatgactcaagttttcttgctctccatgtctccctgtgaagcagagtttttaa 500
Query: 265 -----------cc--------ctg------------------------------------ 269
|| |||
Sbjct: 501 tttgacggagtccagtttatcctgtgtggtccagatcgtctgtgtcttatcttgcatgtg 560
Query: 270 gggcacacatggtgggagaaaagtgactcctgtaagtggtccttggattccttgcacgta 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 561 gggcacacatggtgggagaaaagtgactcctgtaagtggtccttggattccttgcacata 620
Query: 330 cgctacaaataaataaaagacaaccaaccaaccaacc-------------gaaacgccaa 376
||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 621 cgctacaaataaataaaagacaaccaaccaaccaaccaaccaacccaaccgaaacgccaa 680
Query: 377 gatccaacaaagatcccatatccagtctgcaagcaccctccatgcaagcctgg 429
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gatccaacaaagatcccatatccagtctgcaagcaccctccatgcaagcctgg 733
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 829
Length adjustment: 9
Effective length of query: 420
Effective length of database: 820
Effective search space: 344400
Effective search space used: 344400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
