BAC Information

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BAC

Clone NameMSMg01-092M17
Chromosome4 (Build37)
Map Location 151,687,373 - 151,823,643
singlet/doubletdoublet
Overlap geneRnf207, Rpl22, Chd5, Kcnab2, LOC100042028
Upstream geneCamta1, LOC100041960, Dnajc11, Thap3, Phf13, Klhl21, Zbtb48, Tas1r1, Nol9, EG666980, Plekhg5, Tnfrsf25, Espn, LOC100043284, Hes2, Acot7, Gpr153, Hes3, Icmt
Downstream geneNphp4, LOC667039, Gm833, LOC100042089, Ajap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092M17.T7 (MSMg01no092_m17.b1)MSMg01-092M17.TJ (MSMg01no092_m17.g1)
ACCAG310397AG310398
length693809
length of high quality
(start - end)
192 (74 - 265)204 (127 - 330)
definitionCHROMAT_FILE: MSMg01no092_m17.b1 PHD_FILE: MSMg01no092_m17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:46 2005CHROMAT_FILE: MSMg01no092_m17.g1 PHD_FILE: MSMg01no092_m17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(151,823,452 - 151,823,643)(151,687,373 - 151,687,571)
sequence
AACCTCTCTGCGGCTGTCCTGAGGGTGTGGCAGAGACTACAGGGCAGCAG
GAAACCTTCCCACAGTACGACGGCTCCCCCTGTGACCCAGTCTCCCTGGG
ACACCCTTGTCTACACCTGCCAAGTCACCTGGTTCTTTGTAGGACAGGCA
GAAGCCTCAGAACACAGCTTGAAGTCAGCCAGACCTGGGTTAGATCCCAG
TCATGTGCACGAGCCTCCAGGGTAGAGAGGAAGGTGGTTAGCAGAACCTG
TCCCAGGGCTGTGGGGAAGGACTGATAGGTGACAGCCAAATGGGGCTTTG
CACAATGTTGGCTCCAATCTGATGCTCCCTTAAGCCGGGCGTGGTGGCGT
ACACCTTTACCCCCAGTACTCGGGAGGTAGAGGCTGGCCTGGTCTATAGA
GCGAGTTCTAGGACAGTCTGCGTTATACAGAGAACCCCTGTCTCGCATAA
CCTCTATATATAGAATAATCTCCCTTATATATCATCAGGATTCACTAGAA
GCTGGTCCTTCCCACCCTGAAAAGGAGTCCCCAGTGACATAGTGTCCATC
CCTCCTTCTGGCATCAAAACCATTGTGTTTTGGAAGCTGAATCCCATAGG
ATGCCTCTTCTGTCCTATTGCGTCCCCTCTTTCCTCCAATTCCTGTTCCT
TAGGCAACTACACCGTCTACGGACTCAGGGGGGCTTGGTTCTT
CTTTTTCTTTCTTNCCCCTTTTTTTTTTCTTCTTTTTTTCTCTTTTNNNN
CCCGATGATATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGCGCGGTGGTCGCTGGCGATCTG
GACCGGGGATTGAGTCATGATTGGCCCTTCTAACCCGGTGTCTCCCGTCC
CAATCCCCGACCGGGCGCCTGCGCACCTTGCTGCTCTGAGCCGGTCTTAG
GCGATGCGGCCGCGTGACGATGCCTTGAAGTCTCTCCATCAGCTCCTGTC
ACAGGGAAAGAGCTCAGAACGAGGGTGTGCGGCAAGGAGGTGCCATCCAG
TGCGTGAGAGAGAAGTGGAGGACTTGTTTGCACTGGACCTAGTCTAGCGT
ACGTTTGACCTCGTTTTTTTTACACACTCCACCCCTCCTTTAGGATTGTC
CAGAACCAGTCTCGCCCACATCTGTAATAAAAAAAATGTAGCGCCCGTAG
ATAGACGCTGCATTTCGCCGAATCTTATGCTTATGACGCTTATTATGTTC
ACTGCCCTTCTAACAGGTATTCACCTGGTCTGAACAAGGCTCATACTGTA
CGGCACCAGCAGTTCTTATATTCCAAGTTAGCCTGCGGTTTAACTGACAT
ATTCAGCCTCTATGCTGGTTATACCCTATTTTGTACCAATTGTCTCTTTT
TCTTTCTCTTGTCCCCCTTCTTCTCCTTACCCCTCCCCCTCTCTTTCATC
CCTTTACCCTTCTTTCCCGCTTCTTTCCTTCCCCTTCCCCTTTCCCCTAT
TTTTCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_m17.b1 MSMg01no092_m17.b1 CHROMAT_FILE:
MSMg01no092_m17.b1 PHD_FILE: MSMg01no092_m17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:46 2005
         (192 letters)



>mm_chr4_151823252_151823843
          Length = 592

 Score =  356 bits (184), Expect = e-103
 Identities = 190/192 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctccccctgtgacccagtctccctgggacacccttgtctacacctgccaagtcacctggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ctccccctgtgacccagtctccctgggacacccttgtctacacctgccaagtcacctggt 333

                                                                       
Query: 61  tctttgtaggacaggcagaagcctcagaacacagcttgaagtcagccagacctgggttag 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tctttgtaggacaggcagaaacctcagaacacagcttgaagtcagccagacctgggttag 273

                                                                       
Query: 121 atcccagtcatgtgcacgagcctccagggtagagaggaaggtggttagcagaacctgtcc 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 atcccagccatgtgcacgagcctccagggtagagaggaaggtggttagcagaacctgtcc 213

                       
Query: 181 cagggctgtggg 192
           ||||||||||||
Sbjct: 212 cagggctgtggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 192
Length of database: 592
Length adjustment: 8
Effective length of query: 184
Effective length of database: 584
Effective search space:   107456
Effective search space used:   107456
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no092_m17.g1 MSMg01no092_m17.g1 CHROMAT_FILE:
MSMg01no092_m17.g1 PHD_FILE: MSMg01no092_m17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:46 2005
         (204 letters)



>mm_chr4_151687173_151687776
          Length = 604

 Score =  362 bits (187), Expect = e-104
 Identities = 196/199 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcgcggtggtcgctggcgatctggaccggggattgagtcatgattggcccttctaaccc 60
           ||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||
Sbjct: 201 tgcgcggtggtcgctggcgatctggaccggggattgagtcatgagcggctcttctaaccc 260

                                                                       
Query: 61  ggtgtctcccgtcccaatccccgaccgggcgcctgcgcaccttgctgctctgagccggtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtgtctcccgtcccaatccccgaccgggcgcctgcgcaccttgctgctctgagccggtc 320

                                                                       
Query: 121 ttaggcgatgcggccgcgtgacgatgccttgaagtctctccatcagctcctgtcacaggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaggcgatgcggccgcgtgacgatgccttgaagtctctccatcagctcctgtcacaggg 380

                              
Query: 181 aaagagctcagaacgaggg 199
           |||||||||||||||||||
Sbjct: 381 aaagagctcagaacgaggg 399


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 204
Length of database: 604
Length adjustment: 8
Effective length of query: 196
Effective length of database: 596
Effective search space:   116816
Effective search space used:   116816
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)