BAC Information

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BAC

Clone NameMSMg01-093O15
Chromosome4 (Build37)
Map Location 5,224,071 - 5,224,176
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039297, LOC622019, Impad1, LOC100039338
Downstream gene1700012H17Rik, LOC669309, 3110003A22Rik, Cyp7a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-093O15.T7 (MSMg01no093_o15.b1)MSMg01-093O15.TJ (MSMg01no093_o15.g1)
ACCAG311228AG311229
length1,2131,359
length of high quality
(start - end)
106 (61 - 166)282 (198 - 479)
definitionCHROMAT_FILE: MSMg01no093_o15.b1 PHD_FILE: MSMg01no093_o15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:14 2005CHROMAT_FILE: MSMg01no093_o15.g1 PHD_FILE: MSMg01no093_o15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCTTTAAAAGGTACCANGNGNNGGAAGAAATGGGNGGNACTCCTTAAAA
AATCTTCCCCCATTTTTATTTAACTTACTTAATATCTCTCCAAATTATTC
TTGATTTGATGTTACCCCACAGAAGCTTTAAAAAGTTGTATAACTTGACC
CTATTTATGCAGTTAGGTAAACAGGAATCAGGTTTTAGAAAAAAATGAAA
GCACTTTCAAATCCCAATGATTCTCAAACGGCTGAGACTCACGTACAGAA
GTGTTCAGTGTTCTCAGTAATCGGGGAAACGCCAACCAAAGTAACTCTTA
CATCCATTAGAATGGCTAAGATAATTCCTTCTTTTTTTTGCACACACTAT
TGAAGACTCGGAGTTATGGTAAAACTCCTCCCCTGTTTTTTTTTCCCCCC
CCCTTGTATTATTACTTCTTAAAACAAAAAAGGATTTTCTCTGATTTTTG
CATCTATTTGTTTTTTTGCCTCCATTTTATTTATTTCTATTCTTATACGT
AAACATACTTCTTTTTTTTATTTTCATTATATACTTCTTTATTTTACTTT
TTTTTTTATCTTCTCTTTGTATTTTTCTTCTATTTTTGTTATCTCTCTTT
ACTTTCTTTTTTTTGTTTTTTTCTTTCTTTTTTTATGTTTATTCTTCTTT
TATCTGTTTTTATTATTTTATTCCTCTATTTATTCTTTATTCTCTTGCAA
TCTTTTATTTTACTTTTTTACTTTATTTCTTTCTTTTTTTTTTTTTTTTC
CCCTTTCTTTTCTTCTTTTCTTCTTTTTCATATTCTTATTTATTTTTCTA
TTTATATATTTTATCACTTATTTTTTCTTATCTTTCTTTTCTTCTATTAT
CCTTTTTCTTCTTCCATATTTACTATTAACTATTTTATTTTATTATTATT
TTTATCTTTTCTTCTATCTTTTTTTATATTTTTCTAATTTTCTTTCTTCT
ATTCATATTTCTTATATTTTTTTCATATTTTTTCTTTTCATTTATTTCTT
CTATATTTTATTCCTATTTTTATCACTATTTATTTCTTCCATTTTGTCCT
CTTTATTTTTACTTTTCTTCTTTTCATACTCTACTCATAATTTTTAATTT
TTCATTTCTTTTTAGATTGTATATTCTCTATATTTTTTTTATCCTTACTT
ATTTTTTTCTTCCGATTACCTTTTTATCTTCATATTTTTAAGTTCTCTTC
TTTTTTTTTTTTT
GGTCCTNNNTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNTCTTTTTTTNTTTTAGA
TGGAGCGTGGGCGCGTGCGCGAATTAGGTGAACTNAGAAGGATCGCGGAC
TTTTAAATGAGGAAACCAAATGGCAGAGAAGCACCTGCCCTTAAGATCAA
CATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCAC
CTCACACCAGTCACAATGGTTAAGATCAAAAATTCAGGTGACAGCAGATG
CTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATT
GCAGGCTTGTACAACCACTCTGGAAATCATTCTGGCGGTTCCTCAGAAAA
TTGGACATAGTACTACCTGAGGATCCAGCAATACCTCTCCTGGGCATATA
TCCAGAATGCCCCAACTGGTAAGAAGGATTTTTGCTCTACTATGTTCCTA
GCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGATCCCCGACGCCCCTC
AACAGAGGAATGGATACAGAAAATGTGGTACATCTACACCATGAAGTACT
ACTCAGCTATTACAAAGAATGAATCTATGAAATTCCTAGCCAAATGGATG
GACCTGGAGGGTCTCATCCTGAGTGAGGTACCACATTCATAAACGACCTC
ACACAATATGTACTCACTGATAAGTGGATATTAGCCCTCAACCTAGGTTT
CTCGTGATATCAGGCACAATTTTGTTAAACTATATGATATTAAGAAGAAT
GACTATTGAATTGGGCATTACTATTGTTCTCCTTTATACTTGCGAATAAA
ATACCTTTGTTTGGAGTTATCCTACATTAATTTTGGCATTTTAAATGATA
ATGATGTATTCTGTTATACCATTGTTTATAAGGATGTATTTCTATTTTAT
TAATTCATTCTACTAAATCATCTAATTTTATTGTTTTATATTTATTTAAT
AATTTCTTTTCAAATATATTTTATAAGTATATTCTTTATTTTTGTTATTC
TATTTATTTTTTCCCTCTATTTCTATCTTTATATAAGCGATNTTTTTTTA
TACATGTTTTNATATAAGGAATATTTAAATATTTCTTTTTATTTTCCTTT
TTAATAATATATAATTTTTTGTTTTCTATTTATTNTTATGTTAAATTTGC
TGCACCCTCTTATAGTTTATATATATCTAGTATAGTTCTTATTCATATTG
TACCGTTTATAATAATTTCATTATATATAATCCTTATTAATTTTCCTTTA
TGGATATTCNTCTCTTTTATTAATATTTATTACCTTTGTATATTATTTCT
NATTCTAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no093_o15.b1 MSMg01no093_o15.b1 CHROMAT_FILE:
MSMg01no093_o15.b1 PHD_FILE: MSMg01no093_o15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:49:14 2005
         (106 letters)



>mm_chr4_5223870_5224376
          Length = 507

 Score =  170 bits (88), Expect = 2e-47
 Identities = 101/110 (91%), Gaps = 9/110 (8%)
 Strand = Plus / Plus

                                                                       
Query: 2   atttttatttaacttacttaatatctctccaaattattcttgatttgatgttacccca-- 59
           |||||||||||||||||||||||||||||||||||||||||||||||||||||    |  
Sbjct: 202 atttttatttaacttacttaatatctctccaaattattcttgatttgatgtta----aga 257

                                                             
Query: 60  ---cagaagctttaaaaagttgtataacttgaccctatttatgcagttag 106
              |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 aaacagaagctttaaaaagttgtataacttgaccctatttatgcagttag 307


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 106
Length of database: 507
Length adjustment: 8
Effective length of query: 98
Effective length of database: 499
Effective search space:    48902
Effective search space used:    48902
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)