BAC Information

Click to search

BAC

Clone NameMSMg01-094A01
Chromosome4 (Build37)
Map Location 17,088,706 - 17,088,883
singlet/doubletsinglet
Overlap genenone
Upstream geneRipk2, LOC667150, LOC383994, LOC100040154, LOC667212
Downstream geneLOC100040173, Mmp16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094A01.T7 (MSMg01no094_a01.b1)MSMg01-094A01.TJ (MSMg01no094_a01.g1)
ACCAG311296AG311297
length619747
length of high quality
(start - end)
179 (29 - 207)553 (142 - 694)
definitionCHROMAT_FILE: MSMg01no094_a01.b1 PHD_FILE: MSMg01no094_a01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:28 2005CHROMAT_FILE: MSMg01no094_a01.g1 PHD_FILE: MSMg01no094_a01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACGATCCGCGAATTCCTAATTATCTCTCCTAGTCTACCTTAATTGTTAGG
ACCAATCAATAATTCATTTGAGGTCATCAACACCCATAATTAGTAATAAG
GAACAACTCCAAAGACATTTGACATTTGCACACAGGAAGTTTCAAAATGA
AAGCCATCTCTGCCTTATTATAACGTGATCTAAGCGTTACTTTCATNGAC
TAACACACATGGCCATAGGGTGCGGTTATTTAAGGAAGAGTTTGGGGGGC
AAAAAAAAATTATATAGCTAGGGAAAGGTTTCCCCCCTTTTATCCAATAT
GGGAAAAAACCTCTGGGGGGGGGAGAGACTCTCCTACATGGGCGGTTTTT
CTTCCAATACCATGGGGCGGAAAAACAAAAAAAATTTTTTTTTTTTTCTT
CCCTTCTCTTACCCCGGAAAAAAAAAACATTTTCTTTGTTTGTGTTCCCG
CTTCCTACACCACCTATCTTCTGTCGTCTATTAACGCGCTCCTCCTCAGC
ATATTTCATATCATCCTCTCATATCCTCTCTTCTTCTCTTTCTCTCTTCC
TTTTCTTCTTATCAACATAAATAATCCAACCCCCTCGTCCGCATATAACA
ATCTTCTCCCCACCGCGTG
NTTTTTATTAACCCNNNCCCCCCCACCTACCTTTACCAATTTCTTTCCTC
TNCCTCTATTTNTTCTCACTATGATATGTGXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAG
GAATACCGAATGGCAGAGAAGCACCTGAAAAATGTTCAACATCCTTAATC
ATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGT
CAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGCCGAGGAT
GTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTA
CAACCACTCTGGAAATCAGTCTGGCGTTTCCTCAGAAAATTGGACATAGT
ACTACCAGAAGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATG
CCCCAACGGGGAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTA
TTTATAATAGCCAGAAGCTGTAAAGAACCTAGATACCCCTCAACAGAGGA
ATGGATACAGAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTA
TTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAG
GGCGTCATCCTGAGTGAGGTAACACATTCACAAAGAAACTCACACAATAT
GTACTCACTGATAAATGGGAAATTAGCCCCAAACCTAGGATACCCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_a01.b1 MSMg01no094_a01.b1 CHROMAT_FILE:
MSMg01no094_a01.b1 PHD_FILE: MSMg01no094_a01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:49:28 2005
         (179 letters)



>mm_chr4_17088506_17089083
          Length = 578

 Score =  300 bits (155), Expect = 4e-86
 Identities = 173/179 (96%), Gaps = 1/179 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctagtctaccttaattgttaggaccaatcaataattcatttgaggtcatcaacacccata 60
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||
Sbjct: 201 ctagtctaccttaattgttaggaccaatcaataattaatttgaggtcatcaacatacata 260

                                                                       
Query: 61  attagtaataaggaacaactccaaagacatttgacatttgcacacaggaagtttcaaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attagtaataaggaacaactccaaagacatttgacatttgcacacaggaagtttcaaaat 320

                                                                      
Query: 121 gaaagccatctctgccttattataacgtgatctaagcgttactttcatngactaacaca 179
           |||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||
Sbjct: 321 gaaagccatctctgccttattataacttgatctaagcattactttcat-gactaacaca 378


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 179
Length of database: 578
Length adjustment: 8
Effective length of query: 171
Effective length of database: 570
Effective search space:    97470
Effective search space used:    97470
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)