BAC Information

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BAC

Clone NameMSMg01-094C01
Chromosome4 (Build37)
Map Location 130,670,971 - 130,671,278
singlet/doubletsinglet
Overlap genenone
Upstream geneBai2, Col16a1, Pef1, Hcrtr1, Tinagl, Gm853, Serinc2, Fabp3, Zcchc17, Wdr57, 2610200G18Rik, Pum1, LOC622577, Sdc3, Laptm5, Matn1, LOC622681, LOC100041575
Downstream geneGm831, EG664832, LOC100039799, Ptpru, Mecr, Sfrs4, EG664865, EG623230, Epb4.1, LOC666480, LOC100039835, Oprd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094C01.T7 (MSMg01no094_c01.b1)MSMg01-094C01.TJ (MSMg01no094_c01.g1)
ACCAG311383AG311384
length738775
length of high quality
(start - end)
313 (104 - 416)122 (141 - 262)
definitionCHROMAT_FILE: MSMg01no094_c01.b1 PHD_FILE: MSMg01no094_c01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:38 2005CHROMAT_FILE: MSMg01no094_c01.g1 PHD_FILE: MSMg01no094_c01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNNNNNNNNNNNNNNNNCCCCNNNNNNNNNCCCCNNNNCCNNNTC
CCCNCNCCTATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTCTGGTTACATGCAGTTCACTCTTGCTGCCAGAAATG
AGGGTATAGACTCTGGGACTTTAGGAACATCAAGAATTTTCTAGCACGAA
GTCTTTCCTGCCCCATACAAGCTGTTCAGGGACAGACAGTCCTCAAGAGA
ATGTATTTATAGATCACTTGGCAAATCCGATGAAATGATAAAACAATAAA
GTAGAATTATATAACAAAGTTAATCAAACTAATTTAAAATTTAAAAGATA
CCAGACTAGGTGGGTTTCGCTGGCCTTCTTTATGGCTTACAGATGAGCAG
AGCAAGGTGTAGTAGGCAGTTGGAAACTGAGACCCATCTTCTTCTGACGT
CTTGCCCCATGTTTGCTTGCATATTGTCAGTACCCCCATCCACTGGGACT
GGCCCATTGGTACACTGTGCCTCCCACACTGCTTTAGACACCTGCCATTG
CTTGGACGCCTTTACTGTTACACCCCTTCTCTCTTGGGGCTTGCTCACCC
TCACGAGAACAAAAATTTTTTTGGCCATTTCATTTGGCTCATTCTCTGAA
GAAAGGCATCATGAGTTAATAGCTCCCGCCCTGGCCTGGACTCTTCCTAC
AGAATTCTATGCATCTTTTCCTGAACCCGCCATTCCCG
TTTTTTTTTAACACNAACACCCCCTTCTTTCTCTTCCCCTTTTTTCTTCT
CCCCCCCCCCNCCCCTCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGACCTGGGG
CAATCTTGGCCCCCAGATACCTTTTCACGCAGAAGAATGCACTGATGATT
CTTCCTCTTGCAGTGACAAAAACATTTATTTTTATTTATTTATTTTTCTG
CTCATAGCTCCAGGCAGGGAAGCAGGGTGGCAGAAATTCCAGGCTGGTCA
GGAAAACTAAGTGTTAAACGTGGATTCTCAGCTCTATTCCCCCCTTTAAT
TCGGTCCTGGATGCCAGCCCACTTTGGTTGTCAAGTCGTGTCTCATTTCA
AGGTGCCTCTGGGTTCTATGCATACGAGGAATCTAGATTTAACCAGTTTG
AATTTATGTGAATGGAGTAAATATTTAAGCCTGCTGCTGAAACCAGTTAT
TTCACGGTTGTTATTTTATTAAGAGGAGTGAGTCCTAAAATACGAGTTGC
CCCCAATTTATAAATTACACTGCTGGGGAGATGGTTCAGCGGTTATAGCG
CTTGACAGGCAAGCTTGAGGACTTGAATTTCAAATCCCCAACACCTATAT
TAAATCTGAGCGCATGTCAACGTTAGGACTGTATGGACAGGATGCAGGGA
TAGACCATATCCCCCGGGAGTATTTGTCTAGCTTTCTATTTGGCCCGTTG
TACCCCACTCTCACTGATAGACCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_c01.b1 MSMg01no094_c01.b1 CHROMAT_FILE:
MSMg01no094_c01.b1 PHD_FILE: MSMg01no094_c01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:49:38 2005
         (313 letters)



>mm_chr4_130670767_130671478
          Length = 712

 Score =  559 bits (289), Expect = e-164
 Identities = 304/309 (98%), Gaps = 1/309 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctggttacatgcagttcactcttgctgccagaaatgagggtatagactctggg 64
           |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 512 gaattctctggttaaatgcagttcacccttgctgccagaaatgagggtatagactctggg 453

                                                                       
Query: 65  actttaggaacatcaagaattttctagcacgaagtctttcctgccccatacaagctgttc 124
           || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 accttaggaa-atcaagaattttctagcacgaagtctttcctgccccatacaagctgttc 394

                                                                       
Query: 125 agggacagacagtcctcaagagaatgtatttatagatcacttggcaaatccgatgaaatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 agggacagacagtcctcaagagaatgtatttatagatcacttggcaaatccgatgaaatg 334

                                                                       
Query: 185 ataaaacaataaagtagaattatataacaaagttaatcaaactaatttaaaatttaaaag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ataaaacaataaagtagaattatataacaaagttaatcaaactaatttaaaatttaaaag 274

                                                                       
Query: 245 ataccagactaggtgggtttcgctggccttctttatggcttacagatgagcagagcaagg 304
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 273 ataccagactaggtgggtttcgctggccttctttatggcttagagatgagcagagcaagg 214

                    
Query: 305 tgtagtagg 313
           |||||||||
Sbjct: 213 tgtagtagg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 712
Length adjustment: 9
Effective length of query: 304
Effective length of database: 703
Effective search space:   213712
Effective search space used:   213712
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)