BAC Information

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BAC

Clone NameMSMg01-094F15
Chromosome4 (Build37)
Map Location 127,399,802 - 127,400,011
singlet/doubletsinglet
Overlap genenone
Upstream geneTcfap2e, Ncdn, AU040320, Sfpq, Zmym1, LOC665245, Zmym6, LOC100039968, LOC621588, Dlgap3, BC003266, Gja4, Gjb3, Gjb4, Gjb5, LOC667296
Downstream geneLOC635169, 4930465A12Rik, Hmgb4, 4930546G22Rik, Zscan20, Tlr12, Phc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094F15.T7 (MSMg01no094_f15.b1)MSMg01-094F15.TJ (MSMg01no094_f15.g1)
ACCAG311547AG311548
length774773
length of high quality
(start - end)
71 (119 - 189)210 (132 - 341)
definitionCHROMAT_FILE: MSMg01no094_f15.b1 PHD_FILE: MSMg01no094_f15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:58 2005CHROMAT_FILE: MSMg01no094_f15.g1 PHD_FILE: MSMg01no094_f15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCTTTTTTTNNNTTCCCT
TTCNNCNNTCCCCTCCNNTTAATCTATXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCGCGGAATTCATGGTTCTCTACCCATGGTCTC
ATTCCCATTCCCCACCACAGATGCTCACAAACTCCGATTATTCCCTATTC
ATCTATGTAGAAATACCACCATTGCTCTCTCTGTAAATATAGTTTAATGT
CACTTTGCAGAAAATTTGTAGAGCTGGCTACCTTGTTGCAGATTAATGAA
TATTTGGTTAGATGAAAGCAGCTCTTCCTTGACAAATTCTCTCTTCCTAA
GTCAAAAGGTCGGGTGATGCTCTAAGTCTCTTTCCCTTCTGTAGTTGCCT
CCAGGCTGTTGGAGGTAGCTGGAGGAGCTAATTATTTTTATAGCTGCCCC
ACCCCGGGTCTGGTATGTTTATGCTCAGCTGGGACAGAATGACAAGTGAA
ATCTGTGCTCTTCTCTCTCATGCCTCATGTTTTAAAAGTAGTACCACCGT
CTCCGGTATCTACCTTCCAAGCTACTAGGAATCCACTTGCCATCATCCTC
ATTAACCATACCACAATTGATATTATCCTTGTACCAACTTATGACTTTCC
CATTCGCGCGTTAAAGTCCCCAAATCACACTTTCCTTGCCTTTCGTTTCA
ATTAGCAAAATGACCATTCTGCTACTTATCAATTTTAACTTAAAATATTA
ATAGAATTCACCGAGTAATTTCCG
NNNNCCCCTTTTTTTTTTTTTTTTTCTTTTTTCTTCTTTCCTCCCCTTCT
TTTTTCCTCGATGATATGTGAGGCCTGGCGGCCGCCTGTTCCAAAAATGT
AGGTGACCTATAGAATTTCCGAGAAATTCAATCAATTCAGCCTCTTTTAA
TTATTTTAAATTCTTCTATTATTTACCCACTCAAGTCAAATAACCATTAA
GCTCTAAAAATGTAAGAAAATATTGTAAGCTGTATTTGGTGACATGAATT
GGAAGTTCTAGAATAACGATAAAATGGAAGTCATACAAAACAGCTTTTCT
TATGGAGAGAAATAGATGAAAGCATAGTGAGGCCTCATGGGAGTTGGAGG
GACAATAGGCAGTTGGATTCTCCTTCTTTATCTTCTTGACCTTCCATGGT
CCCCTTCTCCGGGTCTCTGCGTGACCTCAGTCTTCTTTCCCATGTTTCCC
TAGCTCCCGCGTTTTTCTCTTTTCTCCCCTAAATGTATTTAGTGTGTGAT
TTTGCGGTCCACCCTTAAATTGATCCACACTACATCCAAAACTTGTACTG
CAGCTCTTCTTTAGATAATACCTTCAGATCTGTCGATTTTATTACCCCCC
TACATGACCCTGTCTTACTTTTCCTAAGATCTGCCGCTGACAGCGCCTTT
CCTCCTGCCCATCCGGCGCTACCGTCTCCCCTTTTTCCCGCCCCATGTTT
CTTTACAAAACCATTCTTTTCGATTTTCTGTCCGTTTATTTTGATTTGAA
ATTCACTTGCCTTTATTTACCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_f15.g1 MSMg01no094_f15.g1 CHROMAT_FILE:
MSMg01no094_f15.g1 PHD_FILE: MSMg01no094_f15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:49:58 2005
         (210 letters)



>mm_chr4_127399602_127400211
          Length = 610

 Score =  368 bits (190), Expect = e-106
 Identities = 205/210 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcaattcagcctcttttaattattttaaattcttctattatttacccactcaagtcaaat 60
           |||| |||||||||||||||||||||||||||||||||||||||   |||||||||||||
Sbjct: 410 tcaactcagcctcttttaattattttaaattcttctattatttaaaaactcaagtcaaat 351

                                                                       
Query: 61  aaccattaagctctaaaaatgtaagaaaatattgtaagctgtatttggtgacatgaattg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 aaccattaagctctaaaaatgtaagaaaatattgtaagctgtatttggtgacatgaattg 291

                                                                       
Query: 121 gaagttctagaataacgataaaatggaagtcatacaaaacagcttttcttatggagagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 gaagttctagaataacgataaaatggaagtcatacaaaacagcttttcttatggagagaa 231

                                         
Query: 181 atagatgaaagcatagtgaggcctcatggg 210
           ||| ||||||||||||||||||||||||||
Sbjct: 230 ataaatgaaagcatagtgaggcctcatggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 210
Length of database: 610
Length adjustment: 9
Effective length of query: 201
Effective length of database: 601
Effective search space:   120801
Effective search space used:   120801
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)