Query= MSMg01no094_j05.b1 MSMg01no094_j05.b1 CHROMAT_FILE:
MSMg01no094_j05.b1 PHD_FILE: MSMg01no094_j05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:17 2005
(629 letters)
>mm_chr4_63010988_63012016
Length = 1029
Score = 526 bits (272), Expect = e-153
Identities = 525/630 (83%), Gaps = 49/630 (7%)
Strand = Plus / Minus
Query: 24 aggatttcggga-agccacaccaatgagaaaccatttgtcagagagctggggacaagcag 82
|||||||| ||| |||| ||||||||||||||||||| ||||||||||||||| ||||||
Sbjct: 960 aggatttc-ggacagccgcaccaatgagaaaccatttatcagagagctggggagaagcag 902
Query: 83 acacacagataagcagggcttggagtatggaacctca----cattcagccatgaagaggg 138
|||| |||| ||||||||||| |||||||| || || |||||| ||| |||||
Sbjct: 901 gcacaaagatgagcagggcttgtagtatgga----cattggcagtcagccgtgatgaggg 846
Query: 139 acata-caag-agatggcttctcagccatacatgggaagactgaagctccagaccaggaa 196
|| | |||| | || ||||| |||||||||||||||||||||||||| ||
Sbjct: 845 cca-agcaagca-attacttctgagccatacatgggaagactgaagctc---------aa 797
Query: 197 cgcatgggcagttcaatattcagccatcctactgctctgtcccatgctgagagacctcag 256
||||||| |||| | ||||||||||||||||| |||||| |||| |||||||||
Sbjct: 796 ---atgggcaactcaaaaatcagccatcctactgctttgtcccctgcttagagacctc-- 742
Query: 257 agtgatgcttctgggtttggggacaatgggatgccaccagggtc-taaggagaggaaagg 315
|||||| |||||||||||| |||| ||||||||||||||||| | |||| ||| ||||
Sbjct: 741 agtgatatttctgggtttggagacagggggatgccaccagggtcttcaggaaagggaagg 682
Query: 316 gcagtaacaggaaccctgagatgaacacagacatcagggaagggaaagcccagaggaaag 375
||||||||| || ||| ||| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 681 gcagtaacaagagcccagagctgaacatagacatcagggaagggaaagcccagaggaaag 622
Query: 376 agtagcctcctacagtgaacaggtccaggccctgggcaggcacttacccagctcagggtc 435
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 621 agtagcctcctacagtgctcaggtccatgccctgggcaggcacttacccagctcagggtc 562
Query: 436 tcattgttgatagggtcgcctatggtgatgttggcaagttctgggttctgagcttccaac 495
||| |||||||||| | ||||||| ||||||||||| || ||||||||||||||||||||
Sbjct: 561 tcagtgttgataggtttgcctatgttgatgttggcatgtcctgggttctgagcttccaac 502
Query: 496 agcagcaggaggctca----caggacaagagccatgtgcagtgccatgctgaggatactc 551
|||| ||||||||||| || ||||| | |||| || ||||||||||| ||||
Sbjct: 501 agcatcaggaggctcaaaatca---caagaactgtgtgtagccccatgctgagggcactc 445
Query: 552 agagacaccagagct-gggaagagataact------tg-----tgcagtggcttttataa 599
|||| |||||| || |||||||||||||| || |||||||||||||||||
Sbjct: 444 agaggcaccagt-cttgggaagagataactggtacctggaggatgcagtggcttttataa 386
Query: 600 gaggatgtggggagggcatgggactgcagc 629
||||||||||||||| |||||||||||||
Sbjct: 385 caggatgtggggagggtatgggactgcagc 356
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space: 630761
Effective search space used: 630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no094_j05.g1 MSMg01no094_j05.g1 CHROMAT_FILE:
MSMg01no094_j05.g1 PHD_FILE: MSMg01no094_j05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:17 2005
(545 letters)
>mm_chr4_62869413_62870364
Length = 952
Score = 978 bits (506), Expect = 0.0
Identities = 538/552 (97%), Gaps = 7/552 (1%)
Strand = Plus / Plus
Query: 1 agttagacctgtggctctccacagtcaccctgaaggggatttgatgtgtgactctggggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agttagacctgtggctctccacagtcaccctgaaggggatttgatgtgtgactctggggt 260
Query: 61 ggagagttctctgtaca-catacttcttggatgggaggcagaggtgtggagacgaaggac 119
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggagagttctctgtacaacatacttcttggatgggaggcagaggtgtggagacgaaggac 320
Query: 120 tcctgtgttctcaatttgggacaaggggaacatttatctcaaggcttgtctcggaaccac 179
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 tcctgtgttctcaatttgggacaaggggaacatttatctcaaggcttgtctcagaaccac 380
Query: 180 ccttatataagcagaaatactgcctcgcctgggcgtgggaactgagaaaccacggacaag 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccttatataagcagaaatactgcctcgcctgggcgtgggaactgagaaaccacggacaag 440
Query: 240 gggtgccaagcgtagccagtcgaagggacctggtgatccaccaccacagctgtcctgcaa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggtgccaagcgtagccagtcgaagggacctggtgatccaccaccacagctgtcctgcaa 500
Query: 300 gatagctgaacagattagatgcctaggggg------gcacaggcaaggccctcaatgaag 353
|||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 501 gatagctgaacagattagatgcctagggggtagggggcacaggcaaggtcctcaatgaag 560
Query: 354 catgtgttcatgcttttcaggtaccttaggatcttgtcatttcataatgacaagacagtt 413
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 561 catgtgttcatgcttttcaggtaccttaggatctcgtcatctcataatgacaagacagtt 620
Query: 414 acaggctctgagaagtgcagcctgagcccactaagtccaacaagaaaggacacgttccat 473
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 621 acaggctctgagaagggcagcctgagcccactaagtccaacaagagaggacacgttccat 680
Query: 474 caactgtgaccatttgtcagctgaggaaagcttctaggagaatttgcatctacaattact 533
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 681 caactgtgaccatttgtcagctgaggaaagcttccaggagaatttgcatctacaattact 740
Query: 534 ctcaggcatcag 545
||||||||||||
Sbjct: 741 ctcaggcatcag 752
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 952
Length adjustment: 10
Effective length of query: 535
Effective length of database: 942
Effective search space: 503970
Effective search space used: 503970
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
