BAC Information

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BAC

Clone NameMSMg01-094N04
Chromosome4 (Build37)
Map Location 152,287,355 - 152,287,837
singlet/doubletsinglet
Overlap genenone
Upstream geneDnajc11, Thap3, Phf13, Klhl21, Zbtb48, Tas1r1, Nol9, EG666980, Plekhg5, Tnfrsf25, Espn, LOC100043284, Hes2, Acot7, Gpr153, Hes3, Icmt, Rnf207, Rpl22, Chd5, Kcnab2, LOC100042028, Nphp4, LOC667039, Gm833
Downstream geneLOC100042089, Ajap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094N04.T7 (MSMg01no094_n04.b1)MSMg01-094N04.TJ (MSMg01no094_n04.g1)
ACCAG311888AG311889
length738691
length of high quality
(start - end)
312 (108 - 419)541 (55 - 595)
definitionCHROMAT_FILE: MSMg01no094_n04.b1 PHD_FILE: MSMg01no094_n04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:38 2005CHROMAT_FILE: MSMg01no094_n04.g1 PHD_FILE: MSMg01no094_n04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTTTTTTTGTGTGTGTTGTTTGTTCGTTTTTTGTNNNTNCNNNNGNCNNN
ACCNNNNNNNCCCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCGCGGAATTCTTTGAAACTTCACGTGTATATTTTTTGACCACA
TGCACTCCCACCCCCACCTCTTCCAGATCCACCCCCACCTTTCGCCTCTC
CAAACTTCAAGTCCTCTCTTTCTCTCTATAACCCATTTGGACCAATTTGT
GCTACCCATGTACTCAAAGGGCATAGCGCCATCCAATAAAGCACTGCCAA
TCTACCAGACGCCATCCTTGAAGGAACCTGGCTCTCCCTCCCTTAGAAGC
CATCAGCTGTCCATAGCTCCTCAGCTGCAGGTAGCTCTTCCAGTGACCCT
CCTTCCCTGTGCAGGATGTTGTCTGGCCTGAGCTTGTGCAGATCTTGAAC
AATCACCACAGATACTCTGGGTTCCACAACACGAAGATCTTGTCGTGTCC
AGGCTTTGTTTGACTTTGGTTCTCTTTAGCTTTTACAAACTTTTTGTTCC
CACTTTGTCAACATTCCTGAGACCTTAAGTTCAGAAAGGGAGCACATGGC
CCTTTTACGTGGCTCCTGGGGATCAAAGTCGGCTGGTCCTTCATGCTAAG
AAGGTACTCTTACTCCCCGATCCCACTTTGCAGGTCCCATGGTCATGTCC
CTACAAACATCATGTACTTTCCTTTATCAAAAGCGGCN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCCACCCTGGAAAGCCCCGCCCCCGGAAAGTCCCGCCCCAGAAAGCC
CCGCCCCAGAAAGCCCCGCCCTGGAAAGCACTGCCCTCTAAGAAACAAGC
TACAGAGCTTGCCACTCCCTCTGTTCTCTGCTGCCTCTCAACTGTTGCAG
AGGCAGGCACCCTTTTGTGCCTTCCCCAATAAGCCTCTTTTGTGAGGTTT
GTTGTGCCCGCGACCTTGTGGTATTCCTTGGCTCCCAACTGCCAGGGTGC
CTTTCTCTTCAGAGCTGCACCACTTTCAGACACAGCCCAGAGAGAGAGAG
AGAGAGAGAGAGCAGCGAACACAGAAAGCTAATGTTCTACCGGCACTGTG
CTGACGCTCGCTCTGCAAGATTCCAATCTTGAGGCAAAGGGAGAAAAATG
AGAGAGAAAGAGAACCATGAAAAGGTCTCAAAAAACAAAAGGGGGTACAA
ACAGAACCCAAACACTATATGCAACCTCTGTGTGGCCCTCCCTTGGCCTG
ACAGGTTGCTAGGAGGTTCCAGCAGGTTCTGCCCACACCCTGTGTTCTCT
GCAGGAAGATAAGCTCAACTCAACACAGAAAGTTCTTGGAATACAGGTGT
TATATGCATAATAATGACGGGTGCTGTCTTTTGCACGGGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_n04.g1 MSMg01no094_n04.g1 CHROMAT_FILE:
MSMg01no094_n04.g1 PHD_FILE: MSMg01no094_n04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:38 2005
         (541 letters)



>mm_chr4_152287355_152288294
          Length = 940

 Score =  866 bits (448), Expect = 0.0
 Identities = 477/490 (97%), Gaps = 7/490 (1%)
 Strand = Plus / Minus

                                                                       
Query: 40  gaaagccccgccccagaaagccccgccctggaaagcactgccctctaagaaacaagctac 99
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 483 gaaagccccgccccagaaagccccgccctggaaatcactgccctctaagaaacaagctac 424

                                                                       
Query: 100 agagcttgccactccctctgttctctgctgcctctcaactgttgcagaggcaggcaccct 159
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 423 agagcttgccactccctctgttctctgctgcctctc-actgttgcagaggcaggcaccct 365

                                                                       
Query: 160 tttgtgccttccccaataagcctcttttgtgaggtttgttgtgcccgcgaccttgtggta 219
           |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 364 tttgtgccttccccaataagcctcttatgtgaggtgtgttgtgcccgcgaccttgtggta 305

                                                                       
Query: 220 ttccttggctcccaactgccagggtgcctttctcttcagagctgcaccactttcagacac 279
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ttcgttggctcccaactgccagggtgcctttctcttcagagctgcaccactttcagacac 245

                                                                       
Query: 280 agcccagagagagagagagagagagagagcagcgaacacagaaagctaatgttctaccgg 339
           |||||      ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 244 agccc------agagagagagagagagagcagcgaacacagaaagctaatgttctacccg 191

                                                                       
Query: 340 cactgtgctgacgctcgctctgcaagattccaatcttgaggcaaagggagaaaaatgaga 399
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 tactgtgctgacgctcgctctgcaagattccaatcttgaggcaaagggagaaaaatgaga 131

                                                                       
Query: 400 gagaaagagaaccatgaaaaggtctcaaaaaacaaaagggggtacaaacagaacccaaac 459
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 gagaaagagaaccatgaaaaggtctcaaaaaacaaaagggggtacaaacagaacccaaac 71

                                                                       
Query: 460 actatatgcaacctctgtgtggccctcccttggcctgacaggttgctaggaggttccagc 519
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70  actatatgcaacctctgtgtggccctcccttggcctgacaggttgctaggaggttccagc 11

                     
Query: 520 aggttctgcc 529
           ||||||||||
Sbjct: 10  aggttctgcc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 940
Length adjustment: 10
Effective length of query: 531
Effective length of database: 930
Effective search space:   493830
Effective search space used:   493830
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)