BAC Information

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BAC

Clone NameMSMg01-095E24
Chromosome4 (Build37)
Map Location 133,184,815 - 133,185,104
singlet/doubletsinglet
Overlap geneZdhhc18
Upstream geneEya3, Xkr8, Smpdl3b, Rpa2, BC013712, LOC100039917, Ppp1r8, Stx12, OTTMUSG00000010099, BC008163, Fgr, Ahdc1, LOC100041932, Wasf2, Gpr3, Cd164l2, Fcnc-ps, Map3k6, Sytl1, D4Ertd196e, LOC100041990, LOC100042018, Wdtc1, Slc9a1, 4732473B16Rik, 2300002D11Rik, 1810019J16Rik, Nudc, Nr0b2, Gpatch3, Atpbd1b, Sfn
Downstream geneLOC545683, Pigv, Arid1a, Rps6ka1, 4930429E23Rik, LOC100042151, Hmgn2, Dhdds, Lin28, Aim1l, Cd52, Ubxd5, Sh3bgrl3, Ccdc21, EG665186, Catsper4, Cnksr1, Zfp593, Grrp1, Pdik1l, Trim63, Slc30a2, Extl1, LOC434166, Pafah2, Stmn1, Paqr7, 2610002D18Rik, 2410166I05Rik, Sepn1, Man1c1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095E24.T7 (MSMg01no095_e24.b1)MSMg01-095E24.TJ (MSMg01no095_e24.g1)
ACCAG312256AG312257
length1,220691
length of high quality
(start - end)
---291 (73 - 363)
definitionCHROMAT_FILE: MSMg01no095_e24.b1 PHD_FILE: MSMg01no095_e24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:17 2005CHROMAT_FILE: MSMg01no095_e24.g1 PHD_FILE: MSMg01no095_e24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTTNNNNTTTTNTNNNNNTTNTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTNCTNNNCTNCCNTTTCACCNAATAGGCAGCTGGNCCTTCG
TCGCTCTCTCCTGTTTTCGTTTTGGTTGGTTCGCGCGNCGCGCGCCCGCG
GGGGGCNGCGGNGCGGCGGCGCGGCGGGGGGGGGCGGGGGGGGCGGCGCG
CGCCTCGCGCGGGCACGGCCGCGGCGGCGCGGCCGCCGCGCCCCCTGCGC
GCGCCGCTCTCACCTTTCATACTCTCTTTTCTTCTTCCTTCTTTTTCTCT
TTTTTGTTTTTTTCTTTCCTTTTTTCTTTGTTTCTAACAAATCTAATTAT
ATTCTTTGTGACATTTGTTTTGCTTGCATTTTGTGTGTTGTCGAGGNCTT
TGTCGTGGTGCTCGCGTGGCCGCTCTTGCCGGTTCTGGGAGCTCGCGGCG
CCGCCTGTTCGTTTTGCGTTCTGTTTGACACGGGTTTATTGTTTCTTCCT
TCGTGTCTTTCGCCATCGCGCGTCCTTTCGGTGTTGTGAGTTGTGGCGTA
TATGGCGCGTGGTTGTTTTTGTTTTTTTTCTCTTGCCCGCGGCTTTGGTT
CTATCCTTGCTGTTATTGCTGTATCTTTAGTTTCTTTCCTTCTTGTTCGT
CGTTTACTGTTATGTATTGTCTCTTTGTAATCTGTTACTTTCGTAATCGG
ACTCTATTAATATTACACACCTCTAATCCAATACATCACATCAGATATAC
TATATCATATACCCGACAGCGAATAGATATATGCACTTGCATAATACGGC
TCAGCACCTTTCCTATCATCTTTTATATTCATTATAGTGTACCGTTAGGA
TTTATACATAATGAACAGCAGACTGTACAATATGTTTAACACGATCTAGA
ATGCAGTGCGCATCGCGTCTTCGTGTATTATGTTTGTTCGTACAGAATTC
AAAGTATTAGTCGTGTAATCACTCTCTTCTCTCCTATATATTATTCTGTG
CGCGACTCATATCATAGACTATATTTATATCACACCCTATATATATGATG
ACTAATCTCTACTGTTATCACGTCTGATTATATATAATCATACATCTCTA
TTTGGTTATAATATAGTATACAATCAAATCTGTTATATGTACTTATATAT
ACATCACTACCACATACAATAATTATTAGATATATTATCATACCACGACT
CCTTATGCTATATATATTCN
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGTGTATAGACCAAGTTGGCCGAGGACT
CACGGGGATCTGCCTGTTTCTGTCTCCAGAGTGGCTGGGATTGAAGGTGT
GAGGTGCCATACCTACCCACCCAGCTGAGGTCCAAACCCAGGGCCTAACA
AGTGCTCTATCACTTGCACTAAGTCTGCAGAACACAGCACCCTGTGTGGC
AGGCCCTGTTTACTGGGCTCTTTTTTTTTTCTTTTTAGTTTATAAGCCAC
TCGGTAGCTCATGTCATATGTATAGCCATTACTCCTAAAAAAGGACTCAG
TAAATATTTGTGTTGCAACTGACTGACATGACTGAGTGACTGACTGACTT
AGTGACTGACTGAATGAATGAATGAATGAATGAATGAATGACTGAGTGAC
TGACTGACTGACTGAGTGATTGACTGACTGACTGACCGACCAACTGTGTT
GACATTGCAACATTGCCATGGATGGCTGGTTACTCAAGGGACAGCCCCCT
TAATAGCTTCCTGAAGTGCTGCGTCTGCTAACTGGATTCTGAGGCTGCCC
CAAGTGTGGTGATCAGGTCTGGAGAGATGGCTCAGTGATTAAAAGCACCT
GCTACTCTTTTAGAGGACCTGGTTCAATTCCTAGCATCCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_e24.g1 MSMg01no095_e24.g1 CHROMAT_FILE:
MSMg01no095_e24.g1 PHD_FILE: MSMg01no095_e24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:17 2005
         (291 letters)



>mm_chr4_133184457_133185147
          Length = 691

 Score =  561 bits (290), Expect = e-164
 Identities = 290/290 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgtatagaccaagttggccgaggactcacggggatctgcctgtttctgtctccagagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 agtgtatagaccaagttggccgaggactcacggggatctgcctgtttctgtctccagagt 589

                                                                       
Query: 61  ggctgggattgaaggtgtgaggtgccatacctacccacccagctgaggtccaaacccagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 ggctgggattgaaggtgtgaggtgccatacctacccacccagctgaggtccaaacccagg 529

                                                                       
Query: 121 gcctaacaagtgctctatcacttgcactaagtctgcagaacacagcaccctgtgtggcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 gcctaacaagtgctctatcacttgcactaagtctgcagaacacagcaccctgtgtggcag 469

                                                                       
Query: 181 gccctgtttactgggctcttttttttttctttttagtttataagccactcggtagctcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 gccctgtttactgggctcttttttttttctttttagtttataagccactcggtagctcat 409

                                                             
Query: 241 gtcatatgtatagccattactcctaaaaaaggactcagtaaatatttgtg 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 gtcatatgtatagccattactcctaaaaaaggactcagtaaatatttgtg 359


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)