BAC Information

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BAC

Clone NameMSMg01-095G24
Chromosome4 (Build37)
Map Location 19,770,938 - 19,771,254
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667251, LOC435772, Cngb3, LOC623122, Cpne3, LOC100040306, 2410005O16Rik, Wwp1, Slc7a13
Downstream geneAtp6v0d2, LOC667282, Ttpa, LOC667301, EG664800, E130310K16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095G24.T7 (MSMg01no095_g24.b1)MSMg01-095G24.TJ (MSMg01no095_g24.g1)
ACCAG312350AG312351
length702662
length of high quality
(start - end)
319 (43 - 361)49 (51 - 99)
definitionCHROMAT_FILE: MSMg01no095_g24.b1 PHD_FILE: MSMg01no095_g24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:27 2005CHROMAT_FILE: MSMg01no095_g24.g1 PHD_FILE: MSMg01no095_g24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTGTTTAGACTGAGTAAGAGCCTTGAGAACTCAGAAAGGAAAGAAATTA
CAGAACCCACTGGCTTTTATGAGGAACAACTTGTTCTGGTACATTTTGTT
TGTTTTAATGAGTTCTGTTTATGGCAATGCACTGAATGCATATTACATAA
ATTGAAACTTGATATTAGTTAAATATGTAATATTATTAGATAAAATTCCA
GACAAGGTGAAACAAGCCCTAACATTAATCCAATGCAAAGAACTTTTTTC
CAAGGGGCTCCAGGGACTTCCCAGGGTACAACAGAGCCCTTTATCAGCAG
GAACACATGCATATTTCTGTGGAAAGTTTATATCCTGGCATTCTCCATGC
TATCTTAAGATGCTGAGTTTTCCACGGCATTCATTTGGGCACTATCCCTG
TTTCTTCTAGCAATTTAGAATAATAAATCGTCACTCCATACCCTTGACAC
ATGTGACTTCTCTCATCCATTCACTTGACCCAGACATTTGATAAAGGCTT
GTTCTACATCTACTATTCACCTGTTTTGGTTTTTTTTTTTTTTTGATTTT
GTAGAACATTCTTTTCTACCTTTGTGAAGGTCTCTAATTTGCATAACCTC
CACAGGCTAAATCATGTTAAATATGATTGTTTAAAAAATAATATAAGCCC
GT
GGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
AAATCTGTGGCCACTCTGACCACAAAGCAAGACCGGTGTGTGTGTGTGTG
TGTGTGTGGTTGGTTTTTTTTTAACAAAATATTATTTGGGCGGGGGGGTA
ATATAACATCTTAAAAAATTCTCATTTTTTCATCAAAAATGTTTGAATTT
TCAATAAAAAATTTTACTTTTTATTACTTATTTTCTCCAAGTACGATTGC
ACGTGCTCAATATTATATCTATATTTATTTTTTTTCCCCCCTACTCGTAT
GTTTATATATTTTTTATGTTTTCTGGGCGGGGCCCTTTTTTTTTTTTTAT
TTTTGTGCGCTGTCCCCCCAACAAAAAAAAAAATTGGGGGTGGGGGGGGG
CCACATCCTCTCCACCCCTCAACTATCCTCATACTCTCCCCCCTTTCCCC
CTCCTCCCCTTTTATCCCTTTTCCCCCACCCTTTTTTTCCCTTCTATCTA
TTTTTTTTTCCCCAACCCCCCCCTCCCCCCAAATATTTTCCATCCTCCCA
CTTCTATACAACACCTAAATGCTCCCCCCCTTCCCCCCCCACTCCCGCCT
CTCATACCTCCGATTACCTTCTCCCCCACGCCTCCTCTTATTCCCTTCCT
TCTTTTTACCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_g24.b1 MSMg01no095_g24.b1 CHROMAT_FILE:
MSMg01no095_g24.b1 PHD_FILE: MSMg01no095_g24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:27 2005
         (319 letters)



>mm_chr4_19770735_19771454
          Length = 720

 Score =  598 bits (309), Expect = e-175
 Identities = 315/317 (99%), Gaps = 1/317 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctgtttagactgagtaagagccttgagaactcagaaaggaaaga-aattacaga 62
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 520 ggaattctgtttagactgagtaagagccttgagaactcagaaaggaaagagaattacaga 461

                                                                       
Query: 63  acccactggcttttatgaggaacaacttgttctggtacattttgtttgttttaatgagtt 122
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 460 acccactggcttttatgaggaacaacttgttctggtacatttcgtttgttttaatgagtt 401

                                                                       
Query: 123 ctgtttatggcaatgcactgaatgcatattacataaattgaaacttgatattagttaaat 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ctgtttatggcaatgcactgaatgcatattacataaattgaaacttgatattagttaaat 341

                                                                       
Query: 183 atgtaatattattagataaaattccagacaaggtgaaacaagccctaacattaatccaat 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 atgtaatattattagataaaattccagacaaggtgaaacaagccctaacattaatccaat 281

                                                                       
Query: 243 gcaaagaacttttttccaaggggctccagggacttcccagggtacaacagagccctttat 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 gcaaagaacttttttccaaggggctccagggacttcccagggtacaacagagccctttat 221

                            
Query: 303 cagcaggaacacatgca 319
           |||||||||||||||||
Sbjct: 220 cagcaggaacacatgca 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 720
Length adjustment: 9
Effective length of query: 310
Effective length of database: 711
Effective search space:   220410
Effective search space used:   220410
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)