BAC Information

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BAC

Clone NameMSMg01-095J16
Chromosome4 (Build37)
Map Location 93,982,915 - 94,136,608
singlet/doubletdoublet
Overlap genenone
Upstream geneTusc1
Downstream gene5830433M19Rik, Plaa, LOC667250, Lrrc19, Ift74, Tek, 4930579C15Rik, LOC100039252, Mysm1, LOC100039265, LOC665029, Jun, LOC100042411
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095J16.T7 (MSMg01no095_j16.b1)MSMg01-095J16.TJ (MSMg01no095_j16.g1)
ACCAG312478AG312479
length793688
length of high quality
(start - end)
311 (131 - 441)289 (56 - 344)
definitionCHROMAT_FILE: MSMg01no095_j16.b1 PHD_FILE: MSMg01no095_j16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:40 2005CHROMAT_FILE: MSMg01no095_j16.g1 PHD_FILE: MSMg01no095_j16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,136,301 - 94,136,608)(93,982,915 - 93,983,201)
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNCCCCNNNNNNNNNNNNNNNNNCCCCNNCCACATCTATAAXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCATTCTTCC
CATGGTGGCCTTGTTCACCCCTCCACTGCTCACTTAAGATGCCCACTGTG
TCCTAACTCAGAACTCTTGGCCCATCTCCTGCCCCTTACCTTCAGCTGAC
CCACAAGAGCCTCTAAAGCCTTTTGCCCTGTTTTCATCTTCTGCTCATGT
AGAGTCTGAGAACATTTCACCATGGGTTTCTCTTGCCCATCTCTACTTTC
ATGGTATGCTTCCACCTTTAATATGATAATAGCACTAAGTTCTGCTCTTT
GAATGCTCATTATGTATCTGTGGTACTGTAGGGATTTGTTTGTACCATCT
TCAAGTCTTTGCACTGTACCCAAAGGGTGGCCGTGTTAACTTTACAGCAT
CCTTGGATGGTTTAGAGAACTTGTCCAGATTGTCCAAGATCAGACTTACT
ACAGCTTACGGTGCAGCAAGATACATGTCAGCCTCTGCACTTAGGCAATT
CTTTATTATTTCCTTCATGTCAGCCTTTTGTTTCATAAGCAATACAGTAT
CACCATGTGACAAACATTGTCACCATCTTTACACCACACACTACTGCCCT
GCTCTATTTGCCATTGTATATGATTCGCTCCTACTCCCACAAATGTACCC
TCTCAAAATAACGCACTCCCTATCCTCATCCTCTCATGCTGAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXAAATCTACAATAGAAGGGAAATTTGTTTTTCTAACTGTTGCAGCT
GGCCGGGTACTGTCCCTTCAAGTTCTTTATAGTTACATTCCCAGGGAGAC
AGACACAGCTCTATTTATCATAGGTCAGTTGAATCTAGATGATGAAGAGG
GATGTGCACTAGACACTTTACATTGAAATTCCCAGGTTTTTCCCCTGGGG
AAATTGCCATCAAAACCTTCCTAAAAGCAGTGGACCTTACAAGGAAGAGA
AAGACATTGACTTGGCCCAGGTAGCCAGAGAAGACAGGTGTGTTGAGTCA
CCCTCGCCAAGCGACATTCTTCAGCTCCTCATGGCCTTCTATGCTTCAGA
CCTACCTGAAACCCTCTTTGTATATAGTGAATGGAAACTTTCCTTGCTCT
GTAGCATCAAGTGCAGACCAGATAGATCAGAAAGAAGAACAAGATCAAGA
CCTCAACATGACCAAGAAGGTCATGTTGTAATAAAGCAGTTCTGTGCAGT
AATTACTTTATGAGCCTCCTCAGGGTAATTCATAAGATTGTGATTCTATG
AGCTTACAGAGTTGACTCCCCACTCCAGTCACCAAAGAACAAGAAGCTCC
CATACCCAAATAGACCAATGACGCTGAGAATACAACAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_j16.b1 MSMg01no095_j16.b1 CHROMAT_FILE:
MSMg01no095_j16.b1 PHD_FILE: MSMg01no095_j16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:40 2005
         (311 letters)



>mm_chr4_94136098_94136808
          Length = 711

 Score =  580 bits (300), Expect = e-170
 Identities = 306/308 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcccattcttcccatggtggccttgttcacccctccactgctcacttaagatgcc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 ggaattcccattcttcccatggtggccttgttcacccctccactgctcacttaagatgcc 452

                                                                       
Query: 64  cactgtgtcctaactcagaactcttggcccatctcctgccccttaccttcagctgaccca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 cactgtgtcctaactcagaactcttggcccatctcctgccccttaccttcagctgaccca 392

                                                                       
Query: 124 caagagcctctaaagccttttgccctgttttcatcttctgctcatgtagagtctgagaac 183
           |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct: 391 caagagcctctaaagccttttgccctgtttccatcttctgctcatgtagagtctgagacc 332

                                                                       
Query: 184 atttcaccatgggtttctcttgcccatctctactttcatggtatgcttccacctttaata 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 atttcaccatgggtttctcttgcccatctctactttcatggtatgcttccacctttaata 272

                                                                       
Query: 244 tgataatagcactaagttctgctctttgaatgctcattatgtatctgtggtactgtaggg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 tgataatagcactaagttctgctctttgaatgctcattatgtatctgtggtactgtaggg 212

                   
Query: 304 atttgttt 311
           ||||||||
Sbjct: 211 atttgttt 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no095_j16.g1 MSMg01no095_j16.g1 CHROMAT_FILE:
MSMg01no095_j16.g1 PHD_FILE: MSMg01no095_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:41 2005
         (289 letters)



>mm_chr4_93982715_93983403
          Length = 689

 Score =  532 bits (275), Expect = e-155
 Identities = 284/287 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatctacaatagaagggaaatttgtttttctaactgttgcagctggccgggtactgtcc 60
           |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 201 aaatctacaatagaagggaaatttgtttttctaactgttgcagctggttgggtactgtcc 260

                                                                       
Query: 61  cttcaagttctttatagttacattcccagggagacagacacagctctatttatcataggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttcaagttctttatagttacattcccagggagacagacacagctctatttatcataggt 320

                                                                       
Query: 121 cagttgaatctagatgatgaagagggatgtgcactagacactttacattgaaattcccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagttgaatctagatgatgaagagggatgtgcactagacactttacattgaaattcccag 380

                                                                       
Query: 181 gtttttcccctggggaaattgccatcaaaaccttcctaaaagcagtggaccttacaagga 240
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtttttcccctagggaaattgccatcaaaaccttcctaaaagcagtggaccttacaagga 440

                                                          
Query: 241 agagaaagacattgacttggcccaggtagccagagaagacaggtgtg 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agagaaagacattgacttggcccaggtagccagagaagacaggtgtg 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)