BAC Information

Click to search

BAC

Clone NameMSMg01-095J21
Chromosome4 (Build37)
Map Location 75,243,929 - 75,244,412
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039814, LOC636847, 3110001D03Rik, LOC623529, LOC100039833
Downstream geneLOC100039884, LOC667845, Ptprd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095J21.T7 (MSMg01no095_j21.b1)MSMg01-095J21.TJ (MSMg01no095_j21.g1)
ACCAG312488AG312489
length676776
length of high quality
(start - end)
490 (18 - 507)259 (139 - 397)
definitionCHROMAT_FILE: MSMg01no095_j21.b1 PHD_FILE: MSMg01no095_j21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:42 2005CHROMAT_FILE: MSMg01no095_j21.g1 PHD_FILE: MSMg01no095_j21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTACCTATTCCGAGAGGATCCGCGGAATTCTTACTGAGCTAAATTAAATG
AATCATTCACTAAATAGAAAATCTCAGTGTATAGAAGTTAGAAACACCTT
TGTCAAAGAAGTATTCTAGAGGACTTATGCGTGTATGTATGTGTGTTAAA
TGCTGTGATATGTTGCTAAATATTGACATTACATTTCATAAAGATATTTC
TAAAGGTAATCTGGTTCTATTTGGGAACAATATATATTTTATATATGGCT
AACTAAATGTTATTGCCAATTCACCTGTTGTACCCAACTGATTTCATGAA
TTTGTTCTCACCTACTCATCTTCTACCCAAAGTCTCTGATCTTATTCTAT
TATAATACTTATTTCCATACATGACCCTAATTTGACTTCTGCAAGGAGAT
GGATTCTTTCTAGTCGAAGTCACTCAGTGCAAGTGGTTTTGATTTGTTTG
TTTTGTTTTAAATGTTTAGATCTGCTCCAATTAGAGGCATTCATTAACAT
GCTGTGTTTAGCATGCAGCCTGCAGAAATCTCAGAAGATTCTGATGGTTT
AAAAGACAAATAAATTGAGTTTAGCTAAAACAGTTAAGATTTCTCACTGC
CAACTATGCCAACATTTATAAAGCCTTACATATAATCTTCAGCAGATCCT
AAAGAAAGAAGCTATACCCTCTCATG
TTTNNNNNNNNNNNNNNNNNCCCTTTNTTNNNTCNNNCCNNNNNCCCCCC
TTTTTCCCNNATTCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATTGAGTATTT
TTGCATTGATATTCATATGGGAAATTAGTTTGAAGTCCTCTATCTTTGTT
GGATTTTTCTGTGATTTAGGTATCAGAGTAATTGTGGCTTCATAGAATGA
CTTGGGTAGAGTACCTTCTAGTTCTATTTGGGGGAATAGTTTGTGGAGAA
CTAGAATTAGATCTTATTTGAAGGTCTGATAGAACTCTGCACTAACCTAT
CTGGTCTAGGTTTTTTTTGGTTGGGAAATTATTAATGCCTGCTTCCAATC
CTTTTTTTTTCTTTTCTTTTTTTTTTTTCCACCCCCTCCCAGTATTAGGC
ATTTTCTTCATTGACCTTTCCCATACTATCCAAAAAGTCCCCCATAACCT
TTCTGCCAATTCCCTACCCTACCAATTCCCATTTTTTTGGTCCTGTGTTC
TACCTTGTTTTCGGTTTTCCTCCCTGCTTGTCTCTCCCCTCCGTTCCTCT
CTTTATTTCTGCTGACCCCCCCACCCCCTTCTTTTTGATACTCTTGCCCG
CTTCTTTTTCCGCCCTCCTTGCTTTATCCGCCTCCCTCCCCCCCGGCTTT
CCCTCTTCTTTATCTCGTCTTTAATTCTTTCTTGGTGCTTTGGTTACTTT
TCTCCCTTTCTTCTACTTTTGTTGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_j21.b1 MSMg01no095_j21.b1 CHROMAT_FILE:
MSMg01no095_j21.b1 PHD_FILE: MSMg01no095_j21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:42 2005
         (490 letters)



>mm_chr4_75243722_75244612
          Length = 891

 Score =  874 bits (452), Expect = 0.0
 Identities = 476/484 (98%), Gaps = 1/484 (0%)
 Strand = Plus / Minus

                                                                       
Query: 8   gaattcttactgagct-aaattaaatgaatcattcactaaatagaaaatctcagtgtata 66
           |||||||||||||| | |||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 691 gaattcttactgagttaaaattaaatgaaccattcactaaatagaaaatctcactgtata 632

                                                                       
Query: 67  gaagttagaaacacctttgtcaaagaagtattctagaggacttatgcgtgtatgtatgtg 126
           || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 631 gacgttagaaacacctttgtcaaagaagtattctagaggacttatgggtgtatgtatgtg 572

                                                                       
Query: 127 tgttaaatgctgtgatatgttgctaaatattgacattacatttcataaagatatttctaa 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 tgttaaatgctgtgatatgttgctaaatattgacattacatttcataaagatatttctaa 512

                                                                       
Query: 187 aggtaatctggttctatttgggaacaatatatattttatatatggctaactaaatgttat 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 aggtaatctggttctatttgggaacaatatatattttatatatggctaactaaatgttat 452

                                                                       
Query: 247 tgccaattcacctgttgtacccaactgatttcatgaatttgttctcacctactcatcttc 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 tgccaattcacctgttgtacccaactgatttcatgaatttgttctcacctactcatcttc 392

                                                                       
Query: 307 tacccaaagtctctgatcttattctattataatacttatttccatacatgaccctaattt 366
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 391 tacccaaagtctctgatcttattttattataatacttatttccatacatgaccctaattt 332

                                                                       
Query: 367 gacttctgcaaggagatggattctttctagtcgaagtcactcagtgcaagtggttttgat 426
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 aacttctgcaaggagatggattctttctagtcgaagtcactcagtgcaagtggttttgat 272

                                                                       
Query: 427 ttgtttgttttgttttaaatgtttagatctgctccaattagaggcattcattaacatgct 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 ttgtttgttttgttttaaatgtttagatctgctccaattagaggcattcattaacatgct 212

               
Query: 487 gtgt 490
           ||||
Sbjct: 211 gtgt 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 891
Length adjustment: 10
Effective length of query: 480
Effective length of database: 881
Effective search space:   422880
Effective search space used:   422880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)