Query= MSMg01no095_p08.b1 MSMg01no095_p08.b1 CHROMAT_FILE:
MSMg01no095_p08.b1 PHD_FILE: MSMg01no095_p08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:08 2005
(505 letters)
>mm_chr4_120621723_120622627
Length = 905
Score = 783 bits (405), Expect = 0.0
Identities = 463/499 (92%), Gaps = 29/499 (5%)
Strand = Plus / Minus
Query: 9 gaattccaggacatcccgagctatactgagaaatcctgtcgcaagaaataaaaggaaggg 68
||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 601 gaattccagaacatccagagctatactgagaaatcctgtcgcaagaaagaaaaggaaggg 542
Query: 69 gagtccaaaggcctcaaagcagcttacaggactgcctcccaaagatgaagcgtctatacc 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gagtccaaaggcctcaaagcagcttacaggactgcctcccaaagatgaagcgtctatacc 482
Query: 129 cagaatttttcatctcacaatggtctctgatattgcagggtctcaacaactcttccaggg 188
|||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 481 cagagttcttcatctcacaatggtctctgatattgcaggggctcaacaactcttccaggg 422
Query: 189 taaaagattatggcctgaggacgatacaaccaggaagcctctcatcgaaagttccagcag 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 taaaagattatggcctgaggacgatacaaccaggaagcctctcatcgaaagttccagcag 362
Query: 249 tttccccacccgaagctgccacccccagtcaggccggcgccaccatgcctcagcagctcc 308
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 361 tttccccacccgaagctgccacccccagtcaggccggcgccatcatgcctcagcagctcc 302
Query: 309 tgatcaccccggccactgaggcgacctgggtgaagttgaaccatcatcccaggaagacca 368
|||||||||||||||||||||||||||||||||||||| |
Sbjct: 301 tgatcaccccggccactgaggcgacctgggtgaagttg---------------------a 263
Query: 369 aggagggggtgtccctgtgggaggatgtgacaaaaatgtttggaggagaaggtgagaaca 428
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 agga---ggtgtccctgtgggaggatgtgacaaaaatgtttggaggagaaggtgagaaca 206
Query: 429 gacaaagttggaagaaggggtggtcccttggggataacttaggggaaagaagatcca--c 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 205 gacaaagttggaagaaggggtggtcccttggggataacttaggggaaagaagatccatgc 146
Query: 487 acggggttcatgcttgtgc 505
||||||||||||||||
Sbjct: 145 ---gggttcatgcttgtgc 130
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space: 443025
Effective search space used: 443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no095_p08.g1 MSMg01no095_p08.g1 CHROMAT_FILE:
MSMg01no095_p08.g1 PHD_FILE: MSMg01no095_p08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:08 2005
(576 letters)
>mm_chr4_120512912_120513889
Length = 978
Score = 1027 bits (531), Expect = 0.0
Identities = 562/573 (98%), Gaps = 2/573 (0%)
Strand = Plus / Plus
Query: 5 tcctccttcatctacctcccaaatgcagtgattgcaggcctctcccactattgcaagcag 64
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 205 tcctccttcatctacctcccaaatgcagtgattgcaggcctctaccactattgcaagcag 264
Query: 65 tatgggttttattcggctagctgggtggatatgaagaaga--tgaaatgtatcccaagtc 122
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 265 tatgggttttattcggctagctgggtggatatgaagaagagatgaaatgtatcccaagtc 324
Query: 123 ctttggctcagagaggacagaactgaagcttacctgactccagacatcagccttggggaa 182
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctttggctcagagaggacaggaccgaagcttacctgactccagacatcagccttggggaa 384
Query: 183 ttaagatgtgggagctagagagcaggaagtctcaaaaggaaagcttaaggaaggctactc 242
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttaagatgtgggagccagagagcaggaagtctcaaaaggaaagcttaaggaaggctactc 444
Query: 243 tgggatcaaaatctacttctgctttccactcattcatggggatctggatttccgccgcct 302
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 445 tgggatcaaaatctacttctgctttccactcattcatggggatccggatttccgccacct 504
Query: 303 cctctctgtgcccactgttccccttcttgtcaggttcctcgacgctgagtgtatcttttc 362
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 505 cctctctgtgcccactgctccccttcttgtcaggttcctcgacgctgagtgtatctcttc 564
Query: 363 ttccgcatcctgcctcattcaaccacatctcagactcagagagcagttgaaatcaaattt 422
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttctgcatcctgcctcattcaaccacatctcagactcagagagcagttgaaatcaaattt 624
Query: 423 taaaagggccctttcttgatttatttctgcttttgagagggtctagagcaggtgagcaaa 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 taaaagggccctttcttgatttatttctgcttttgagagggtctagagcaggtgagcaaa 684
Query: 483 ctaaatattctggcagacaagaggttatggacagtgtaagagaaaagctgcagggctgga 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ctaaatattctggcagacaagaggttatggacagtgtaagagaaaagctgcagggctgga 744
Query: 543 gaggtccctcagtagttatggacatttcttttg 575
|||||||||||||||||||||||||||||||||
Sbjct: 745 gaggtccctcagtagttatggacatttcttttg 777
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 978
Length adjustment: 10
Effective length of query: 566
Effective length of database: 968
Effective search space: 547888
Effective search space used: 547888
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
