Query= MSMg01no096_a10.b1 MSMg01no096_a10.b1 CHROMAT_FILE:
MSMg01no096_a10.b1 PHD_FILE: MSMg01no096_a10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:14 2005
(489 letters)
>mm_chr4_96369604_96370493
Length = 890
Score = 909 bits (470), Expect = 0.0
Identities = 482/486 (99%), Gaps = 3/486 (0%)
Strand = Plus / Plus
Query: 6 gaattctatggtacatgccaccattgtactctgcttcctggatgtcctgatggtatcagt 65
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctatggtaca-gccaccattgtactctgcttcctggatgtcctgatggtatcagt 264
Query: 66 tttgtttgtcactctcttccaccataatgaacagaagtgtctgagaccacaagacaaaat 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttgtttgtcactctcttccaccataatgaacagaagtgtctgagaccacaagacaaaat 324
Query: 126 aatcattttcttaatta-tttttttgagatatttgtcacaccaaaaaaa-ccccacctaa 183
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 325 aatcattttcttaattaatttttttgagatatttgtcacaccaaaaaaaaccccacctaa 384
Query: 184 tacaattgttgaggatagacgtagaaagatcacattaaatagatgtttttaacaagtgat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tacaattgttgaggatagacgtagaaagatcacattaaatagatgtttttaacaagtgat 444
Query: 244 tgtttatgaagttgcctgataccaccaatgacactgatctctttgaggttggaagttgtt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgtttatgaagttgcctgataccaccaatgacactgatctctttgaggttggaagttgtt 504
Query: 304 aatacctctgcattcccattgcatggttcatggctcctgtcccatacaactgggtgactg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aatacctctgcattcccattgcatggttcatggctcctgtcccatacaactgggtgactg 564
Query: 364 gttgaaatatactctatccgttgagaactagtaccttgtttgcaaattagatgtgtgaga 423
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gctgaaatatactctatccgttgagaactagtaccttgtttgcaaattagatgtgtgaga 624
Query: 424 aatattaaatattaatatcttaaaaataataaatattagaaccaatttaaacaaatttaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aatattaaatattaatatcttaaaaataataaatattagaaccaatttaaacaaatttaa 684
Query: 484 aaggtg 489
||||||
Sbjct: 685 aaggtg 690
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 890
Length adjustment: 10
Effective length of query: 479
Effective length of database: 880
Effective search space: 421520
Effective search space used: 421520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no096_a10.g1 MSMg01no096_a10.g1 CHROMAT_FILE:
MSMg01no096_a10.g1 PHD_FILE: MSMg01no096_a10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:14 2005
(598 letters)
>mm_chr4_96438927_96439924
Length = 998
Score = 1141 bits (590), Expect = 0.0
Identities = 596/598 (99%)
Strand = Plus / Minus
Query: 1 ttcatagtaaccctaggatcagaagctggggccagaaatacatgtgaggaagctaactgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 ttcatagtaaccctaggatcagaagctggggccagaaatacatgtgaggaagctaactgc 739
Query: 61 caggtttccaacacactactcatgctgtgttttcccctttcttttaaaatggcaaatttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 caggtttccaacacactactcatgctgtgttttcccctttcttttaaaatggcaaatttc 679
Query: 121 tattttcagtaaagtaggtagctaacacaccgcctagaagaaagaactgtgagtttgtga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tattttcagtaaagtaggtagctaacacaccgcctagaagaaagaactgtgagtttgtga 619
Query: 181 acaacacaacaagaaatgtgtgttgaagagatgtttgtgctaagcagagacacatgtcgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 acaacacaacaagaaatgtgtgttgaagagatgtttgtgctaagcagagacacatgtcgt 559
Query: 241 ttctcagctggagagtctatttcatgctaatttttaaagtgctatgtatttttttttaaa 300
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 558 ttctcagctggagagtctatttcatgctaatttttaaagtgctacgtatttttttttaaa 499
Query: 301 gacagtttttacttgaaacagacctaacaggttatttttggtttcacatctactgtggtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 gacagtttttacttgaaacagacctaacaggttatttttggtttcacatctactgtggtt 439
Query: 361 gttctaaaagataggaagatacactgaagaatttcttgggcatttctgccctgagtgtac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gttctaaaagataggaagatacactgaagaatttcttgggcatttctgccctgagtgtac 379
Query: 421 caagagaaggattttataggtaagtaaagcaaatatgatataagttctctgtctccaccc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 caagagaaggattttataggtaagtaaagcaaatatgatataagttctctgtctccaccc 319
Query: 481 aggagtgttctctctcctccatggccttcaaagtctacacttcctgctatgatggtctgt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 aggagtgttctctctcctccatggccttcaaagtctacacttcctgctatgatggtctgt 259
Query: 541 tactctgtttttgaatcctcattcaattccaagtttcttttttttcttttcttttttt 598
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 258 tactctgtttttgaatcctcattcaattccaaatttcttttttttcttttcttttttt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space: 580944
Effective search space used: 580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
