Query= MSMg01no096_c23.b1 MSMg01no096_c23.b1 CHROMAT_FILE:
MSMg01no096_c23.b1 PHD_FILE: MSMg01no096_c23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:27 2005
(286 letters)
>mm_chr4_99005756_99006438
Length = 683
Score = 435 bits (225), Expect = e-126
Identities = 270/293 (92%), Gaps = 16/293 (5%)
Strand = Plus / Minus
Query: 1 tttcttcaattataatgtatgacttttttctaatgaaaagtttttgcactataacctaga 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 tttcttcaattataatgtatgacttttttctaatgaaaagtttttgcattataacctaga 382
Query: 61 ctacatccatgtagtatttttttataattaagtgctgtttggtattatagatactatcag 120
||| |||||||||||| |||||||||||||| ||||||| ||||||||||||||||||
Sbjct: 381 ctatatccatgtagta---ttttataattaagtactgtttgatattatagatactatcag 325
Query: 121 aaatccaaatgaagccataaaaacaggaagaaggaggaagagaagaaaaaaatgctttat 180
||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 324 aaatccaaatgaagccagaaagacaggaagaaggaggaagagaagaaaaaaatgctttag 265
Query: 181 gaaatagccatgaaaccagagacaggaatctatgactaccctaactatcctgacatttct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gaaatagccatgaaaccagagacaggaatctatgactaccctaactatcctgacatttct 205
Query: 241 ctg----attttttt---acctgtgtccttgaaacccaaggaggtcaaatctg 286
||| | | |||||||||||||||||||||||||||||||||||
Sbjct: 204 ctgagcaa------taagacctgtgtccttgaaacccaaggaggtcaaatctg 158
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 683
Length adjustment: 9
Effective length of query: 277
Effective length of database: 674
Effective search space: 186698
Effective search space used: 186698
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no096_c23.g1 MSMg01no096_c23.g1 CHROMAT_FILE:
MSMg01no096_c23.g1 PHD_FILE: MSMg01no096_c23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:27 2005
(480 letters)
>mm_chr4_98899287_98900166
Length = 880
Score = 920 bits (476), Expect = 0.0
Identities = 479/480 (99%)
Strand = Plus / Plus
Query: 1 cttaattaaacatgtcatcatgtctagaatttaataggtgcctaataattgtttgctcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 cttaattaaacatgtcatcatgtctagaatttaataggtgcctaataattgtttgttcag 260
Query: 61 gcaatgaataaatgatgcattaaaatgaaataaataggcgttgattctttttttccagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcaatgaataaatgatgcattaaaatgaaataaataggcgttgattctttttttccagaa 320
Query: 121 atatatttcattgttacagaaggaagtatacattgttattactccctaaattgtgtatgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atatatttcattgttacagaaggaagtatacattgttattactccctaaattgtgtatgt 380
Query: 181 aggtagaggctgctattaccggacatcagaattttaaaattaaattatacatgcatagtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggtagaggctgctattaccggacatcagaattttaaaattaaattatacatgcatagtt 440
Query: 241 taaagtgttatcataaagtgaacatagcctagcaacaccactttggaatatatttgaaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaagtgttatcataaagtgaacatagcctagcaacaccactttggaatatatttgaaag 500
Query: 301 gtggacttatttcacaataagtagaaatgattctgaatttaaattagcattgttttgact 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtggacttatttcacaataagtagaaatgattctgaatttaaattagcattgttttgact 560
Query: 361 tcagaatcttaggtaaacacagaacaacatgatttaaacatagagatggctctaaggtgc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcagaatcttaggtaaacacagaacaacatgatttaaacatagagatggctctaaggtgc 620
Query: 421 ctttccgagtcccactcctcgtgagggacagccacaagcagcttcacttttgagtgaaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctttccgagtcccactcctcgtgagggacagccacaagcagcttcacttttgagtgaaat 680
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space: 408900
Effective search space used: 408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
