BAC Information

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BAC

Clone NameMSMg01-096E22
Chromosome4 (Build37)
Map Location 47,001,003 - 47,001,310
singlet/doubletsinglet
Overlap geneGabbr2
Upstream geneTdrd7, Tmod1, BC057893, AU014645, Xpa, LOC624430, LOC666379, LOC666389, Foxe1, 5830415F09Rik, Hemgn, LOC100040643, Anp32b, Nans, Trim14, Coro2a, Tbc1d2
Downstream geneAnks6, LOC435781, Galnt12, Col15a1, Tgfbr1, LOC666236, LOC666473, Alg2, Sec61b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096E22.T7 (MSMg01no096_e22.b1)MSMg01-096E22.TJ (MSMg01no096_e22.g1)
ACCAG313015AG313016
length1,062780
length of high quality
(start - end)
---308 (127 - 434)
definitionCHROMAT_FILE: MSMg01no096_e22.b1 PHD_FILE: MSMg01no096_e22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:37 2005CHROMAT_FILE: MSMg01no096_e22.g1 PHD_FILE: MSMg01no096_e22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTCTTGNGTCNTTTTTTCTCTTCTCTTCTTTTCCTTCCCTTCCTCTCT
CTCTTTCCCCTCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT
TCAGAGAGATCGCGCGGAATTCCAGGACAGTTTCCCTAGCAGGAACTATG
CTCAAAAATAAAAAGGCAAGAGGCAGGAGGATGGAGCGAGTTATTTCCTC
CTCTCCTCCTCTTCTTCCTTTTCTCCCCCCTTTTTCCCCTCTCGTTCCTC
CTCTTTCTTTGCTCCCTCTTCTCTTTTGCTCCCTCCCTCTTCGTTCTTCT
TCGCTCTCTCTCCTCTCCTTTCTTTCTTCTCTCCTCCTCTCTTTTCTCCT
TTCCTCTTCTCTCCCTTCTCCCCTCTCTCTTTCTCCTCTTTCTCTCTCTT
CTCCCCTTTCTTCTTTTTTTCCTTTTTTTCCTTTCCCTCCTTCGCTCTCC
CTTTTCTTTTCTTTTCTCTCCCCTCTCATCTCTCCTCTTTTCTCTCCTTC
CTTCCTCTCTCTTTCCCTCCCTTGCCTTCCCCTCTCCTCTTCTTCTTTTC
CCCCCTCTTTCTCTCCTTCTTTTTTTGTCCCCCCCCCCTCCCCCCCTCCT
TCTTCTTTCCCTTCTTCTACTCTTTCCCGTCTCCTTCTTCTCACTCTCCT
TCCTTATCTGTCCTCCTTCTCCTCTCTTCATCTCTCCTCTTCTCTTCCCA
TTTCTTTCCCCCTCTCTATTTTTTCCACTCTCCTACTTTCCTTCGCCCTC
CTTCCCTCCTCCCCTCTCATTCCTTCCCTCTTTTCCCTCCCTCTCCTTCT
CCTCTTTCCCTCTTTTTTCTTCTCTTCTCTTTCTCTTTTCCCCCTTCTCT
TTCTCTTTCCTCTTTTTCGCTCCTTTTCTCTTCCGCTCTCCTTACTCTTT
TTCCTTTCCTGTCTCCTCTGTTTCTCCCTCCCGCTGTATATCTCGCTTTC
TCTCGCTCTTTCCTCGTCTCTCTCCTCTTCCTCCTTCTATCTTTTCTTTC
CTTTATTCTCTCCTTCTCCTCACCCCCTGTCTCTATTATGCGTCTCCCTT
CTCACCCTTCCC
CTTCCTTTTTTTTTTTTCCTACTTTTTTTCGTCGTCTTCCTCCAATCTAT
CCAACGATGAAGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATACCATCTTGGGCAGCTTATGGA
GACTATCTCAAAATAAAGATGTACGAAGAGATCTGGGGATATAATTGGCC
AAACCTTTGGCTTCTGGGTTGGATCCCCAGCATTGCAAAAAGGAAAACAG
GAAGTTATACTGCCTGTCTCATCGAAGAAGAGGCTCAACCAACATAAATA
CATGAGGAGGTAGGCTGGCCTGGGAGAGCAGATAAACTATGCCTTGCTGT
ATCTTTCACCCTTTTTACAGGCGTTGTGGACCAAGGTCCATCCTGCCTTC
CTTTAGTTACTGGTCAATGAGGCTATGACTGACAGCCTATGTCAACAAAG
CCAGGTAAGATTAGGCCATCACACCATCCCTGCATTCAAGTCTTCTGACA
GGAGCAGCACACGGCGAGGAGGTAGTTCTCTGAGTCCACAAACCCAGCCT
TGCACTAACAGAGGCTACTCACTCCCTCTGAAGTGGCAAATGCCTTTCCT
ATTGCCCTGCATCTACTGCCTGTTCTCAGACTGACTTTCCCTTCTGTTAT
GTTCATAGAAAACTTTTTTCACTGGTTGTGGTTCCGTCTCCATTATATCG
CTTGCGCTTTTTTCCTTCCTTTTTCTTATTTCCTTTTTTTACTATCTTTT
ACTCCCCCTACTTATTCTCCTTCCCCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_e22.g1 MSMg01no096_e22.g1 CHROMAT_FILE:
MSMg01no096_e22.g1 PHD_FILE: MSMg01no096_e22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:37 2005
         (308 letters)



>mm_chr4_47000803_47001510
          Length = 708

 Score =  536 bits (277), Expect = e-157
 Identities = 301/309 (97%), Gaps = 2/309 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataccatcttgggcagcttatggagactatctcaaaataaagatgtacgaagagatctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 ataccatcttgggcagcttatggagactatctcaaaataaagatgtaggaagagatctgg 260

                                                                       
Query: 61  ggatataattggccaaacctttggcttctgggttggatccccagcattgcaaaaaggaaa 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 ggatataattggccaaacctttggcttctgggttggatccccagtattgcaaaaaggaaa 320

                                                                       
Query: 121 acaggaagttatactgcctgtctcatcga-agaagaggctcaaccaacataaatacatga 179
            ||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 321 ccaggaagttctactgcctgtctcatc-acagaagaggctcaaccaacataaatacatga 379

                                                                       
Query: 180 ggaggtaggctggcctgggagagcagataaactatgccttgctgtatctttcaccctttt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ggaggtaggctggcctgggagagcagataaactatgccttgctgtatctttcaccctttt 439

                                                                       
Query: 240 tacaggcgttgtggaccaaggtccatcctgccttcctttagttactggtcaatgaggcta 299
           |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 440 tacaggcggtgtggaccaaggtccatcctgccttcctttagttactggccaatgaggcta 499

                    
Query: 300 tgactgaca 308
           |||||||||
Sbjct: 500 tgactgaca 508


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 708
Length adjustment: 9
Effective length of query: 299
Effective length of database: 699
Effective search space:   209001
Effective search space used:   209001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)