BAC Information

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BAC

Clone NameMSMg01-096I22
Chromosome4 (Build37)
Map Location 23,556,121 - 23,556,618
singlet/doubletsinglet
Overlap genenone
Upstream gene1700025O08Rik, LOC625462, LOC383998
Downstream geneLOC100040464, LOC623873, LOC664973, F730047E07Rik, Klhl32
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096I22.T7 (MSMg01no096_i22.b1)MSMg01-096I22.TJ (MSMg01no096_i22.g1)
ACCAG313206AG313207
length775718
length of high quality
(start - end)
301 (99 - 399)498 (51 - 548)
definitionCHROMAT_FILE: MSMg01no096_i22.b1 PHD_FILE: MSMg01no096_i22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:57 2005CHROMAT_FILE: MSMg01no096_i22.g1 PHD_FILE: MSMg01no096_i22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCTTTTTTTTTTTTTTCTACATTACTACCCACTCTTCCTCCACTAAACC
CCCCTCTATAATTGCGGCGCTATACGACTCACTATATGCAGAAATGCGCG
GAATTCCTCTTGGTTGCTTTAACTTGGATGAGTATGAAGTGTCCCTCTTT
GTCTTTTTTGATATCTTTGGCTTGCAAGTCAATTTTATTAGATATTAGAA
TGGCTACTCCAGCTTTTTTCTTCAGACCATTTGCTTGGAAAATTGTTTTC
CAGCCTTTCATTCTGAGGTAGTGTCTCTCTTTTTCCCTGAGATGGGTTTC
CTGTAAGCAGGAAAATGTTGGGTCCTGTTTATGTAGCCAGTCTGTTAGTC
TATGTCTTTTTATTGGGGAGTTGAGTCCATTGATATTACGAGATACTAAG
GAAAAGTAATTGTTGCTTCCTAACATCCTTGTTGTTAGAGTTGGCATTCT
GTTCTTGTGGCTGTCTTCTCTTTAGCTTTGTTGAAGGATTACTTTCTTTC
TTTTTCTATGGTGTGGCTTCCGCCCTTGCATTGATTTTCTCCTCGTATTA
TCCTTTGAAGGTCTGGATCCGCGCACCGATATTGCCCGAACTTGGCTCTG
TCCTGCACTAATTTTGCTTCTCCAGCTATGGCAATTGAAGAGTTTGGCTG
TTCTAAGCATCCTGCGCTGTCATTTGCTTCTTCCTTGTGCCTGCATACAA
TCTGTACCGTGCTCTTCTGGCCTTCCTTTTTTTTTCGTGAATATTCCCCG
CGCAACTTTGACCCCCTCCGCCTCT
GGCGACGCCTGGCTTTCGAATAAAGGTGAACTATAGAAGGATTCCCCAAA
TTCTTGGTGCCAAATCAATTCCTCTTCCCTATGAAGATTCTGCCCCTTTT
GAGTTCTTAGCCATTTAAGGTATTCTTTTAAATAAGCAGAACAATTGCAT
TTTTCTTGTTGGGTGTTTAAATATTCACTCTCTCTCTCCCTTCCCTCTCT
TCCTCTCTCTTTTTCTGACTCTATATAAGCATGCATATATACATAAACAT
GTGTTTAAGAACACCTGAGTCCAGCATTTATACAAATTTTATTTGTGGGA
GGAATCTCACTGTTTAATCCATGTTCTAATTACTCACAGGATTTATTCAC
AATTGTTTGACATGCCCATCATGCTGAGCCTAGGAAAATAAGCATATTCT
TTTTTTTCTTTGCAGCTCTTTTCTTGACTTATGAAAGCTAAATATCCATT
CTGTATGGAGAGATGAATCAGCAATCCATATAATATCTATTCATCATACA
TATTTCACAAGGAGGATATTATGGTGACTGCAAAGTTCTTACAAAAATAA
TATGGAAATCCGGAACTTGATGTGGAGTGCCAGAGAGCCTCTTACTATTA
TTTACCCTATCACCTTTTGCTTTCTGAAATCAATGCCATGGCTTCAGGTT
CCGTTACATCCTATTTTCTGAGTATGAACTGGAATTTATAGCCTGTATCA
TGTTGAACTACCGCTCGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_i22.g1 MSMg01no096_i22.g1 CHROMAT_FILE:
MSMg01no096_i22.g1 PHD_FILE: MSMg01no096_i22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:57 2005
         (498 letters)



>mm_chr4_23555755_23556652
          Length = 898

 Score =  948 bits (490), Expect = 0.0
 Identities = 496/498 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcttggtgccaaatcaattcctcttccctatgaagattctgccccttttgagttcttag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 864 ttcttggtgccaaatcaattcctcttccctatgaagattctgccccttttgagtttttag 805

                                                                       
Query: 61  ccatttaaggtattcttttaaataagcagaacaattgcatttttcttgttgggtgtttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ccatttaaggtattcttttaaataagcagaacaattgcatttttcttgttgggtgtttaa 745

                                                                       
Query: 121 atattcactctctctctcccttccctctcttcctctctctttttctgactctatataagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 atattcactctctctctcccttccctctcttcctctctctttttctgactctatataagc 685

                                                                       
Query: 181 atgcatatatacataaacatgtgtttaagaacacctgagtccagcatttatacaaatttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 atgcatatatacataaacatgtgtttaagaacacctgagtccagcatttatacaaatttt 625

                                                                       
Query: 241 atttgtgggaggaatctcactgtttaatccatgttctaattactcacaggatttattcac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 atttgtgggaggaatctcactgtttaatccatgttctaattactcacaggatttattcac 565

                                                                       
Query: 301 aattgtttgacatgcccatcatgctgagcctaggaaaataagcatattcttttttttctt 360
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 564 aattgtttgacatgcccatcatgctgagcctagggaaataagcatattcttttttttctt 505

                                                                       
Query: 361 tgcagctcttttcttgacttatgaaagctaaatatccattctgtatggagagatgaatca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgcagctcttttcttgacttatgaaagctaaatatccattctgtatggagagatgaatca 445

                                                                       
Query: 421 gcaatccatataatatctattcatcatacatatttcacaaggaggatattatggtgactg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gcaatccatataatatctattcatcatacatatttcacaaggaggatattatggtgactg 385

                             
Query: 481 caaagttcttacaaaaat 498
           ||||||||||||||||||
Sbjct: 384 caaagttcttacaaaaat 367


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space:   433344
Effective search space used:   433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)