BAC Information

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BAC

Clone NameMSMg01-097B03
Chromosome4 (Build37)
Map Location 13,401,393 - 13,401,795
singlet/doubletsinglet
Overlap genenone
Upstream geneOTTMUSG00000004461
Downstream geneLOC100039988, Runx1t1, LOC625831, LOC433687, LOC100040030, LOC433688
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097B03.T7 (MSMg01no097_b03.b1)MSMg01-097B03.TJ (MSMg01no097_b03.g1)
ACCAG313595AG313596
length705706
length of high quality
(start - end)
624 (44 - 667)539 (71 - 609)
definitionCHROMAT_FILE: MSMg01no097_b03.b1 PHD_FILE: MSMg01no097_b03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:40 2005CHROMAT_FILE: MSMg01no097_b03.g1 PHD_FILE: MSMg01no097_b03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGGAA
TTCTCACCTGTGGCAAAGCGAATGGCAGAGAAACACCTGAAAAAATGTTC
AATATCCTTAATCATCAGGGAAATGCAAATCAAAACAACACTGAGATTCC
ACTTCACTCCAGTCAGAATGGCTAAGATCAGAAACTCAGTTGACAGCAGA
TGTTGGCGAGGATGTGGAGAAAGGGGAACACTCCTCCATTGTTGGTGGGA
TTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAA
AATTGGACATAGTACTACCGGAGGATCCCGCAATACCTCTCCTGGGCATA
TATCCAGAAGATGTCCCAACCGGTAAGAAGAACACATGCTCCACTACGTT
CATAGCAGCCTTGTTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCC
CCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGAA
TACTACTCAGCTATTAAAAAAATGAATTTATGAAATTCCTAGGCAAATGG
ATGGACCTGGAGGGCATCATCCTGAGTGAAGTAACCCAGTCACAAAGGAA
CTCGCACAATATGTACTCACTGATAAGTGGATAATAGTCCAGAAACTTAG
GATACCCAAGATATAAGATACAGCTTGCCAAAGTGGGCACTTATTGATTG
AATTG
ATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCTGGGTGATTAGGCATGTCAGAATTACCC
TGGGGTGACAGAAATGTGTTTGAACGAGCCAGTACCCGCTCAAATCCTTG
GTATATGGAGCATGAATCTTTAAGATCTGTGATTGTTTACACATGAAAAG
ACAAAGTACTATTTCAGAGGGGAAAAATCACAACGATCAGAAAGCTTTTG
GTCATCAAATCAACAATTTGATGAGTTAACTCAAAATGAATCAGAAACAT
ATGGATTGAATTTCTCTTACCAAACACATGAATTTAAAAGGAAAAGAGAA
CTCTGAAAATGTGTTTTGAATTTCCTTAACCCCGAAATGTTTGAAAAATA
ATTTGATGCAATTGGAGGAATGAGAATGGGCTTGGTGTCTCCCAATTTGG
GGAAGCCAACCAACTGACTCTGCAGTGCTAACACTGCATGTTCTTAAATC
AGCAAATACTAAGAAAAAGGTTTTCCTCTCTATTTGCCCATAAATAGGAG
CAGAAAGTTTGAAATGTATATAGAAAGTTTCTTTATCTCTTTATAATAAA
TAGAAATCACAATGTCCACAGATGCCTTTGACGACATTTTATCTCTTTGT
CGATAGTAACATAAAAGGAGAGATTAAATTCTACAGATGATTTTTATACT
TCTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_b03.g1 MSMg01no097_b03.g1 CHROMAT_FILE:
MSMg01no097_b03.g1 PHD_FILE: MSMg01no097_b03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:41 2005
         (539 letters)



>mm_chr4_13400860_13401798
          Length = 939

 Score =  764 bits (395), Expect = 0.0
 Identities = 401/403 (99%)
 Strand = Plus / Minus

                                                                       
Query: 137 tactatttcagaggggaaaaatcacaacgatcagaaagcttttggtcatcaaatcaacaa 196
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 936 tactatttcagaggggaaaaatcacaacgatcagaaagcttttggtcatcaaatcaacaa 877

                                                                       
Query: 197 tttgatgagttaactcaaaatgaatcagaaacatatggattgaatttctcttaccaaaca 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 tttgatgagttaactcaaaatgaatcagaaacatatggattgaatttctcttaccaaaca 817

                                                                       
Query: 257 catgaatttaaaaggaaaagagaactctgaaaatgtgttttgaatttccttaaccccgaa 316
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 catgaatttaaaaggaaaagagaactctgaaaatgtgttttgaatttccttaaccccgaa 757

                                                                       
Query: 317 atgtttgaaaaataatttgatgcaattggaggaatgagaatgggcttggtgtctcccaat 376
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 atgtttgaaaagtaatttgatgcaattggaggaatgagaatgggcttggtgtctcccaat 697

                                                                       
Query: 377 ttggggaagccaaccaactgactctgcagtgctaacactgcatgttcttaaatcagcaaa 436
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 ttggggaagccaaccaactgactctgcagtgctaacactgcatgttcttaaatcagcaaa 637

                                                                       
Query: 437 tactaagaaaaaggttttcctctctatttgcccataaataggagcagaaagtttgaaatg 496
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 tactaagaaaaaggttttcctctctatttgcccataaataggagcagaaagtttgaaatg 577

                                                      
Query: 497 tatatagaaagtttctttatctctttataataaatagaaatca 539
           ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 576 tatatagtaagtttctttatctctttataataaatagaaatca 534


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space:   491441
Effective search space used:   491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)