MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-097C07
Chromosome	4 (Build37)
Map Location	49,055,152 - 49,055,467
singlet/doublet	singlet
Overlap gene	none
Upstream gene	LOC100040788, Nr4a3, Stx17, Txndc4, Invs, Tex10, 5730528L13Rik, Tmeff1, 2310039E09Rik
Downstream gene	E130309F12Rik, LOC666602, Rbpsuh-ps1, C730036D15Rik, LOC100040919, LOC666617, Rbpsuh-ps2, LOC230161, Baat, Mrpl50, Zfp189, Aldob, 2810432L12Rik, LOC100040742, Rnf20, Ppp3r2
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC100040788 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040788
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs

name	Nr4a3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18124 MGI:1352457
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Stx17 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67727 MGI:1914977
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Txndc4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76299 MGI:1923549
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Invs (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16348 MGI:1335082
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tex10 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:269536 MGI:1344413
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	5730528L13Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66665 MGI:1913915
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tmeff1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:230157 MGI:1926810
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2310039E09Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68016 MGI:1915266
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	E130309F12Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:272031 MGI:2445015
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC666602 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666602
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	Rbpsuh-ps1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19665 MGI:96523
definition	gene_synonym : Igkrsbp-ps1 note : recombining binding protein suppressor of hairless (Drosophila), pseudogene 1 pseudo : _no_value

name	C730036D15Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:209186 MGI:2444345
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040919 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040919
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 61 ESTs, 12 Proteins pseudo : _no_value

name	LOC666617 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666617
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	Rbpsuh-ps2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19666 MGI:96524
definition	gene_synonym : Igkrsbp-ps2 note : recombining binding protein suppressor of hairless (Drosophila), pseudogene 2 pseudo : _no_value

name	LOC230161 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:230161
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs, 25 Proteins

name	Baat (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12012 MGI:106642
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mrpl50 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:28028 MGI:107329
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Zfp189 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:230162 MGI:2444707
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Aldob (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:230163 MGI:87995
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2810432L12Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67063 MGI:1914313
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040742 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040742
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST

name	Rnf20 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:109331 MGI:1925927
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ppp3r2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19059 MGI:107171
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040788 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149252384 GeneID:100040788
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs product : hypothetical protein LOC100040788 transcript_id : XM_001475260.1

name	Nr4a3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118131008 GeneID:18124 MGI:1352457
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nuclear receptor subfamily 4, group A, member 3 transcript_id : NM_015743.2

name	Stx17 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84579892 GeneID:67727 MGI:1914977
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : syntaxin 17 transcript_id : NM_026343.2

name	Txndc4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:88900513 GeneID:76299 MGI:1923549
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : thioredoxin domain containing 4 (endoplasmic reticulum) transcript_id : NM_029572.2

name	Invs (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:111120341 GeneID:16348 MGI:1335082
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : inversin transcript_id : NM_010569.3

name	Tex10 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801807 GeneID:269536 MGI:1344413
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : testis expressed gene 10 transcript_id : NM_172304.3

name	5730528L13Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802429 GeneID:66665 MGI:1913915
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 5730528L13 gene transcript_id : NM_028137.2

name	Tmeff1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130469 GeneID:230157 MGI:1926810
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transmembrane protein with EGF-like and two follistatin-like domains 1 transcript_id : NM_021436.2

name	2310039E09Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142388680 GeneID:68016 MGI:1915266
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2310039E09 gene transcript_id : NM_026509.2

name	E130309F12Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142375125 GeneID:272031 MGI:2445015
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA E130309F12 gene transcript_id : NM_178756.3

name	C730036D15Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31981759 GeneID:209186 MGI:2444345
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA C730036D15 gene transcript_id : NM_145368.2

name	LOC230161 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:94371759 GeneID:230161
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs, 24 Proteins product : novel protein similar to bile acid-Coenzyme A: amino acid N-acyltransferase Baat, transcript variant 1 transcript_id : XM_131433.6

name	LOC230161 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:94371760 GeneID:230161
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 4 Proteins product : novel protein similar to bile acid-Coenzyme A: amino acid N-acyltransferase Baat, transcript variant 2 transcript_id : XM_899543.2

name	Baat (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110225338 GeneID:12012 MGI:106642
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : bile acid-Coenzyme A: amino acid N-acyltransferase transcript_id : NM_007519.2

name	Mrpl50 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802785 GeneID:28028 MGI:107329
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mitochondrial ribosomal protein L50 transcript_id : NM_178603.3

name	Zfp189 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21704077 GeneID:230162 MGI:2444707
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger protein 189 transcript_id : NM_145547.1

name	Aldob (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31981737 GeneID:230163 MGI:87995
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : aldolase 2, B isoform transcript_id : NM_144903.2

name	2810432L12Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31560201 GeneID:67063 MGI:1914313
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2810432L12 gene transcript_id : NM_025944.2

name	LOC100040742 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149252382 GeneID:100040742
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST product : hypothetical protein LOC100040742 transcript_id : XM_001475497.1

name	Rnf20 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:33859828 GeneID:109331 MGI:1925927
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ring finger protein 20 transcript_id : NM_182999.1

name	Ppp3r2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142365824 GeneID:19059 MGI:107171
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type II) transcript_id : NM_001004025.2

name	LOC100040788 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149252385 GeneID:100040788
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001475310.1

name	Nr4a3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7657397 CCDS:CCDS18163.1 GeneID:18124 MGI:1352457
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0001707 - mesoderm formation [Evidence IMP]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : neural orphan receptor 1 product : nuclear receptor subfamily 4, group A, member 3 protein_id : NP_056558.1

name	Stx17 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84579893 CCDS:CCDS18164.1 GeneID:67727 MGI:1914977
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0030868 - smooth endoplasmic reticulum membrane [Evidence ISS] GO_function : GO:0003674 - molecular_function [Evidence ND]; GO:0008565 - protein transporter activity [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0006886 - intracellular protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : syntaxin 17 protein_id : NP_080619.2

name	Txndc4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19072792 CCDS:CCDS18165.1 GeneID:76299 MGI:1923549
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0005788 - endoplasmic reticulum lumen [Evidence ISS]; GO:0005789 - endoplasmic reticulum membrane [Evidence ISS] GO_function : GO:0005515 - protein binding [Evidence ISS]; GO:0003756 - protein disulfide isomerase activity [Evidence ISS]; GO:0015035 - protein disulfide oxidoreductase activity [Evidence IEA] GO_process : GO:0009100 - glycoprotein metabolism [Evidence ISS]; GO:0006457 - protein folding [Evidence ISS] [Evidence IEA]; GO:0030503 - regulation of cell redox homeostasis [Evidence ISS]; GO:0006986 - response to unfolded protein [Evidence ISS]; GO:0045045 - secretory pathway [Evidence ISS] codon_start : 1 note : endoplasmic reticulum resident protein 44kDa product : thioredoxin domain containing 4 protein_id : NP_083848.1

name	Invs (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:111120342 CCDS:CCDS18166.1 GeneID:16348 MGI:1335082
definition	GO_component : GO:0005856 - cytoskeleton [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005874 - microtubule [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005516 - calmodulin binding [Evidence IEA] GO_process : GO:0007275 - development [Evidence IEA]; GO:0016055 - Wnt receptor signaling pathway [Evidence IEA] codon_start : 1 note : inversion of embryonic turning product : inversin protein_id : NP_034699.3

name	Tex10 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124249335 GeneID:269536 MGI:1344413
definition	GO_component : GO:0005615 - extracellular space [Evidence IEA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0005386 - carrier activity [Evidence IEA] GO_process : GO:0006810 - transport [Evidence IEA] codon_start : 1 note : clone 18330 product : testis expressed gene 10 protein_id : NP_758508.2

name	5730528L13Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312384 CCDS:CCDS18167.1 GeneID:66665 MGI:1913915
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0042802 - identical protein binding [Evidence IPI] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC66665 protein_id : NP_082413.1

name	Tmeff1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:39930405 CCDS:CCDS18168.1 GeneID:230157 MGI:1926810
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0008083 - growth factor activity [Evidence IEA] codon_start : 1 note : tomoregulin-1; tomoregulin-like product : transmembrane protein with EGF-like and two follistatin-like domains 1 protein_id : NP_067411.1

name	2310039E09Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13386000 CCDS:CCDS18169.1 GeneID:68016 MGI:1915266
definition	codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC68016 protein_id : NP_080785.1

name	E130309F12Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30520211 CCDS:CCDS18170.1 GeneID:272031 MGI:2445015
definition	codon_start : 1 note : ortholog of human plasticity related gene 3 PRG-3 product : plasticity-related protein 3 protein_id : NP_848871.1

name	C730036D15Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981760 CCDS:CCDS18171.1 GeneID:209186 MGI:2444345
definition	GO_function : GO:0008415 - acyltransferase activity [Evidence IEA]; GO:0016290 - palmitoyl-CoA hydrolase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006629 - lipid metabolism [Evidence IEA] codon_start : 1 note : novel protein similar to bile acid-Coenzyme A: amino acid N-acyltransferase Baat product : hypothetical protein LOC209186 protein_id : NP_663343.2

name	LOC230161 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:38078346 GeneID:230161
definition	codon_start : 1 product : hypothetical protein isoform 1 protein_id : XP_131433.3

name	LOC230161 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:82893170 GeneID:230161
definition	codon_start : 1 product : hypothetical protein isoform 2 protein_id : XP_904636.1

name	Baat (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110225339 CCDS:CCDS18173.1 GeneID:12012 MGI:106642
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005777 - peroxisome [Evidence IEA] GO_function : GO:0008415 - acyltransferase activity [Evidence IEA]; GO:0047963 - glycine N-choloyltransferase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0016410 - N-acyltransferase activity [Evidence ISS] [Evidence IDA]; GO:0016290 - palmitoyl-CoA hydrolase activity [Evidence IEA]; GO:0004759 - serine esterase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0008206 - bile acid metabolism [Evidence IDA]; GO:0006631 - fatty acid metabolism [Evidence IEA]; GO:0006629 - lipid metabolism [Evidence IEA] codon_start : 1 note : taurine N-acyltransferase; bile acid-Coenzyme A dehydrogenase: amino acid n-acyltransferase product : bile acid-Coenzyme A: amino acid N-acyltransferase protein_id : NP_031545.2

name	Mrpl50 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30519921 CCDS:CCDS18174.1 GeneID:28028 MGI:107329
definition	GO_component : GO:0005739 - mitochondrion [Evidence IDA] codon_start : 1 product : mitochondrial ribosomal protein L50 protein_id : NP_848718.1

name	Zfp189 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21704078 CCDS:CCDS18175.1 GeneID:230162 MGI:2444707
definition	GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 exception : mismatches in translation product : zinc finger protein 189 protein_id : NP_663522.1

name	Aldob (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21450291 CCDS:CCDS18176.1 GeneID:230163 MGI:87995
definition	GO_process : GO:0008152 - metabolism [Evidence IEA] codon_start : 1 product : aldolase 2, B isoform protein_id : NP_659152.1

name	2810432L12Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31560202 CCDS:CCDS18177.1 GeneID:67063 MGI:1914313
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] codon_start : 1 product : hypothetical protein LOC67063 protein_id : NP_080220.2

name	LOC100040742 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149252383 GeneID:100040742
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001475547.1

name	Rnf20 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33859829 CCDS:CCDS18178.1 GeneID:109331 MGI:1925927
definition	GO_component : GO:0005694 - chromosome [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0016874 - ligase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0016568 - chromatin modification [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA]; GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 product : ring finger protein 20 protein_id : NP_892044.1

name	Ppp3r2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:51591899 CCDS:CCDS18179.1 GeneID:19059 MGI:107171
definition	GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0004723 - calcium-dependent protein serine/threonine phosphatase activity [Evidence ISS] GO_process : GO:0006952 - defense response [Evidence TAS]; GO:0005977 - glycogen metabolism [Evidence TAS]; GO:0007321 - sperm displacement [Evidence TAS] codon_start : 1 note : protein phosphatase 2B regulatory subunit 2; protein phospatase 3, regulatory subunit B, alpha isoform (calcineurin B, type II); PP2B beta 2; calcineurin B subunit product : protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type II) protein_id : NP_001004025.1

name	LOC666602 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666602
definition	number : 1 pseudo : _no_value

name	LOC666617 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666617
definition	number : 1 pseudo : _no_value

name	(CDS detail)
type	misc_feature
link
xref
definition	note : 5'end EcoR I site of the 2.4 kb fragment

name	(CDS detail)
type	misc_feature
link
xref
definition	note : homologous to RBP-Jkappa 5' flanking region

name	(CDS detail)
type	misc_feature
link
xref
definition	note : homologous to RBP-Jkappa 5'flanking region

name	(CDS detail)
type	misc_feature
link
xref
definition	experiment : experimental evidence, no additional details recorded note : 3'end EcoR I site

name	LOC100040919 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149252391 GeneID:100040919
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 61 ESTs, 12 Proteins product : similar to plasticity-related protein 3 pseudo : _no_value transcript_id : XR_032278.1

clone name	MSMg01-300J19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-288D17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-329I01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-408K04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-274G07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-377F11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-449P15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-294A19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-215K03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-466L02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-332H21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-333F01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-405A08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-054O05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-463B24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-516G24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-391A06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-403H02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-489G01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-319O20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-437M03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-475I23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-167I14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-057C19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-289D04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-421B07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-300G22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-080D24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-083D07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-465C01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-482N20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-428E22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-471N11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-510H20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-352J19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-347I23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-370A07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-175D24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-357A08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-426E24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-190F06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-350M23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-519O04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-504H19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-547J22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-372N12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-347H06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-097C07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-097E06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-324P10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-489N09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-362G24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-509D11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-476G04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-232L02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-422J10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-429O16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-547F16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-538M16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-143D06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-510P10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-512K01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-359P09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-194P19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-236N08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-467E18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-533J20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-056A22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-078K01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-385K22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-357L04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-303N10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-454G04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-078I07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-513E12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-117M18
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-264C12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-378A04
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-195L21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-490B19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-147C14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-176B09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-423D20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-346B24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-485B04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-119L20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-529J19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-536C14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-067N23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-409K20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-146G13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-319H19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-101E17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-098I24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-101D17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-337H19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-125F09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-153E16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-341C14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-402L06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-431L13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-097M10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-462H05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-453A07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-428D03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-360P16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-154H23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-425I12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-334C22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-083O15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-451H20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-205P21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-178F17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-291I07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-077D15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-253I06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-002P12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-109L10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-142F23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-284N21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-021H13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-112N05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-220L10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-229M03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-128E19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-088B05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-324L02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-231O09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-339O14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-026M11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-306C19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-340J08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-045K17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-021E07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-120E06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-227J05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-165K20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-165K21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-061D01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-224C19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-220M15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-128H10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-089D20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-246B03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122M16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-349G16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-077M13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-339D11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-314I20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-088C07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-118J19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-124A23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-278K17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150M07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-196B19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-316N21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-044I05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-096C13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-304A13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-183O17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-198C15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-116K04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-211J23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-342C17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-183A23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-276A16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-333G03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-015C18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-093E03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-118E24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-288G21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-012O18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-210A08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-044O17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-021P08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-065D05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-086B24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-084C19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260B11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-260C11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-341P22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-086H12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-173C09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-308N15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-288B23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-160D07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-080C09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-153O22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-078I14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-123M04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-097G06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-055I13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-088G10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-020B06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-104C08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-104J16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-042L08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-158L16
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-097C07.T7 (MSMg01no097_c07.b1)	MSMg01-097C07.TJ (MSMg01no097_c07.g1)
ACC	AG313650	AG313651
length	1,276	772
length of high quality (start - end)	---	320 (131 - 450)
definition	CHROMAT_FILE: MSMg01no097_c07.b1 PHD_FILE: MSMg01no097_c07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:47 2005	CHROMAT_FILE: MSMg01no097_c07.g1 PHD_FILE: MSMg01no097_c07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:47 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	CACCACACACCCACAAAACAAAAAACACCACANCAACCAACCCAAGGCCC CCNCNCNAACACCCCACCACACATACTCCACCCACCCCCTCTCATTTCTA NCACACATAACCATACTATATTCACTAAAAATCCACCATCATAAACCGAC AATATATTTCCTCCAAAAACGCTAACCTGAGAAAGATAAAAAAATAAAAG ACGCAAAATACGCCGAAGCAAAAACCCACGCACGACATACATACACCGCA CCCCCTCATACACAATCTAATCTATCACACAACCAAACACGCTGGCACTC CCCGTTTTTTTATATATCTCGTATATAGGCGTCACAAAGCGATTTAACAC TGTGCGACCGCGAAGCCATTAGGGCGCCACCCATAGTAGCATGTCTACAT ACTGCTTTGGGACTCATTATGGCCGACCNTCGGCAGTGTGGAGGCGATGC TAACATCAACGAGCAGGCGTATACGACCCGACCCTGACCCACTGCAGAAC ATAATCGTGAAGAGAGCCGATGAGGGGAGTTGGACAATCGCCCTCCATAG ACCACGTGAGGGCACGAACGTCGGCCCGGGTGTACTCGTGGACATATTCT TCTATTTATATACCGTCACCGCCTACGTCCGTATANTGTTACGTGCGCAC CGCCAACTCGCGGCGACAGTCGCAGGTGGAGAGTGGGATATGGATTACAT GACTATGTATATATGATCTAGCACGATATGGCGACGGCGGTGAANTCGAG CATAAGCAGGTATACGGAGTAGACATAAACATGCAACGACGGCGGGGGGA CAGGAGGCAGATGTGTGGGTGAGGAGAAATAAAGACGAACGCATCGTAGA TGAGGAGCGGGAGAGGGATGAGATGAAGGATATAGAAGAGGACAGGAGGT CAGACATAATAGAAAAGAAGCCGAGGGCGGCGCAGTGCCGGCGCGATATA AATGTGTGAGCAACGAGGATAGATAGATGAGGGAGAATATAGAAGGGTGA GAAGAGCGAGTGGAAAGGGGCGGGGTACGTTGTGTGCGANAAGAGCGGTA GTATGTGACAAGCNGCAGCGCGGCTGGAGATGAAGAAGGAGAAGATACAC AGATAATGAGTATGATAAANTAGGACGATATGACGCGTAGAAATATGAAT AAGCGCGCGACAACAATATACGGATGACGAGAGAAAGATCGCCGAGAGAC ACAAGAACAAGAGAGAAGTTGAACAGTGAAGNATGACAGTAAGCGATAGA CGTAGAGATGTGTGAAGACGGGCAGN	NAAAACACATTTTTTTACAAAACCACAATAACACCGCGTCCCCTCTCCNN NNNCCCCAATGCTATGTGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXCACAGGACATGGGAAAGAAAAC CAAATCAAAATGCCTTAAGCCAGTCCAAGTGAACTTCTCAAGTAACTGAA ACATCTAGTGGTATCCTAAGGCACAGTAAATTCAACATCATCTTACAGAT ATAATCCTTATGGTATTCCCAGTCTTACAGTGCCTCAACTGCTTAGTGTC CTAGTAAGGAAAAACATGACAGTTTTCCTTTTGTGAATTTTGACCTAATT CTCTAGGGTTCTATCATTTACCATCTGCTGGAAACCACAGTGGCTAGGAC AGCGGAAAGCCTGATCCACTGGGTTGGGATTCTAGGCTCATGCTTATATA TGGGAGAGCAGCGTTTGTTTGTTTGCTTGTTTGTAGTATGCCAACTGCTT AGCTGGATGCATCCTTGGTTGGAGGATGACAAGAGTAAGCTAGAACAGCA AATGTCCCCAATCTCACTGCTCAACATACTGGTACACCGATCTGCGTAAA TTAAAAATGAAGTTCTTCCGGGGAAAATTTCCTACCGAATATAACCGCCA GGATGCCAACTCGTCTTTGGCATTGGTATTTATGAACAAGAATTGCCCCC CCCCAACCCTAGGCGATCCCTTGAAGTTTTACCTCTTTTTAGGGAACCCT TCGTAATAAGCGCAAGACATGT
quality values	Open. Hide. 10 10 10 10 10 12 13 10 8 8 8 8 8 8 8 8 8 6 6 7 8 22 21 8 6 6 8 10 9 9 9 3 0 3 17 7 7 6 6 8 7 7 9 9 9 9 9 8 9 10 10 3 0 3 0 3 0 3 8 6 6 6 8 8 6 6 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 10 8 9 9 11 11 12 12 11 6 6 6 6 8 6 11 11 3 0 3 10 8 8 8 8 6 6 6 6 6 8 8 8 8 8 8 8 8 8 10 8 8 7 6 6 13 11 12 8 8 6 6 8 8 6 8 6 6 6 6 6 8 13 11 8 8 8 8 9 8 10 9 9 9 9 9 8 8 8 8 8 8 9 8 8 9 6 6 6 6 6 6 8 6 8 8 8 8 8 9 9 9 6 6 6 6 10 8 11 12 7 6 6 6 13 8 10 8 8 9 8 10 10 12 12 8 6 6 8 6 6 6 6 8 6 8 10 15 10 6 6 6 7 11 11 6 6 8 8 8 6 6 6 6 8 6 6 6 8 8 8 8 8 8 8 8 9 10 10 11 7 11 6 6 8 8 8 6 6 6 6 8 8 8 8 8 8 10 8 8 6 6 8 8 10 8 9 10 10 7 7 7 7 7 7 9 10 12 8 8 8 8 6 6 8 8 8 8 10 7 6 6 6 6 6 10 11 10 10 9 9 9 9 10 12 12 10 11 10 10 8 8 6 6 8 6 8 8 8 8 6 6 6 6 8 8 8 6 6 6 6 6 6 12 9 10 10 10 8 8 8 8 6 8 8 8 8 10 11 8 8 8 8 8 8 8 15 12 9 7 8 8 13 10 10 9 9 8 11 9 10 11 11 11 11 12 11 11 11 10 10 10 9 8 8 8 10 8 9 9 9 9 9 6 10 7 7 8 8 6 6 8 8 10 8 8 8 8 8 8 8 11 11 9 9 3 0 3 6 6 10 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 6 8 6 6 8 8 8 8 6 6 6 6 8 8 8 8 8 8 8 8 9 8 8 8 7 8 7 9 10 10 10 8 8 8 8 8 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 6 8 6 6 8 8 8 8 8 8 7 6 10 8 11 16 10 10 8 8 6 8 6 6 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 6 6 6 8 8 8 6 6 6 6 8 6 8 8 8 8 8 8 9 10 8 8 8 10 10 6 6 7 7 8 8 6 6 8 8 8 8 8 10 8 8 7 6 6 6 6 6 7 8 8 8 6 6 6 6 8 8 8 10 10 10 16 10 10 6 6 6 6 6 6 6 6 6 8 9 9 10 8 8 8 8 10 10 11 11 3 0 3 6 8 10 13 11 8 8 8 7 7 9 9 10 10 6 6 8 8 8 8 9 8 8 10 10 12 10 9 8 8 8 6 8 6 6 8 10 14 9 7 8 6 7 6 6 8 8 11 11 9 10 10 9 8 8 8 8 8 8 8 8 8 8 8 6 6 6 6 8 8 9 10 10 9 10 9 8 8 6 6 6 6 6 6 8 6 8 8 8 8 8 6 6 6 6 8 8 8 8 9 8 10 8 8 8 8 3 0 3 10 6 6 6 6 6 6 6 8 8 8 10 8 8 8 8 8 8 8 6 10 6 6 6 8 8 8 9 9 9 6 8 6 6 6 6 8 6 6 7 7 6 6 13 7 6 6 9 7 6 9 9 6 6 6 7 11 6 8 8 8 8 8 8 6 6 6 6 6 6 8 13 8 8 8 8 6 10 7 7 8 8 6 6 6 6 6 10 8 8 8 10 8 8 8 8 8 9 9 9 11 10 10 6 6 6 6 6 8 6 6 6 6 8 6 6 6 8 8 8 8 8 8 8 8 7 6 6 8 6 6 6 8 8 8 6 6 6 8 8 8 11 11 11 11 9 9 6 10 7 6 6 6 9 9 9 10 9 6 6 6 6 6 6 6 6 7 10 10 9 6 6 8 6 6 6 6 6 6 6 7 8 10 10 10 10 8 8 6 6 6 6 6 6 8 6 8 8 8 8 8 8 10 10 10 8 7 7 8 8 6 6 6 6 6 6 8 8 8 6 6 8 6 6 6 6 6 6 6 12 6 6 6 7 7 8 8 10 8 9 8 8 8 8 8 6 10 7 7 7 6 9 9 15 8 8 7 7 8 8 6 6 6 6 8 10 7 6 8 6 6 10 10 10 10 9 7 8 6 6 6 10 8 8 8 6 6 6 6 6 6 8 3 0 3 8 6 6 6 6 7 6 9 9 9 9 9 10 10 8 8 10 7 6 8 6 3 0 3 6 6 6 6 6 6 6 6 6 6 6 8 10 10 6 6 6 6 10 7 7 8 8 8 8 8 8 8 10 6 6 6 6 6 6 8 8 8 12 12 9 11 10 8 8 8 8 8 8 9 9 9 9 3 0 3 6 8 6 6 6 6 6 6 6 6 6 8 6 8 8 6 6 6 6 7 7 8 9 8 8 8 8 8 8 10 10 10 9 9 9 10 11 9 8 8 8 8 8 8 6 6 6 6 6 8 6 8 9 9 9 10 9 9 8 8 8 8 8 8 8 8 7 7 7 6 6 6 6 6 8 10 10 6 6 6 6 7 9 19 11 8 6 6 7 6 10 9 9 9 7 10 6 6 7 6 7 6 6 6 6 7 7 8 8 3 0 3 7 7 7 7 6 6 6 6 6 6 6 6 6 7 6 6 8 8 6 6 6 6 8 8 6 6 6 6 6 6 6 6 6 6 8 8 8 8 8 8 8 3 0	Open. Hide. 0 3 17 19 11 11 10 10 10 8 8 8 8 8 8 8 9 19 19 10 8 8 8 8 8 8 9 9 10 9 11 11 12 18 11 21 8 8 6 6 11 8 6 6 6 7 8 3 0 0 0 0 0 3 6 6 7 7 9 13 8 8 8 8 8 8 8 9 10 10 10 23 23 39 37 37 37 39 37 37 37 37 37 33 34 21 13 9 9 9 8 7 8 8 13 16 11 13 20 20 30 25 22 11 11 11 26 27 53 48 50 34 27 14 11 11 10 13 11 14 11 9 9 9 13 14 15 11 9 9 16 18 35 35 31 31 30 39 39 47 48 48 48 48 57 57 48 48 43 39 39 39 48 39 39 41 46 41 41 41 41 43 43 54 59 57 47 43 43 43 46 46 43 43 36 40 32 37 35 35 35 43 42 57 57 47 44 43 43 42 57 57 42 42 35 32 32 43 42 47 47 42 44 43 43 43 43 43 43 43 35 35 32 43 43 43 43 43 44 50 54 54 52 52 52 43 43 37 52 52 57 57 57 52 52 52 52 52 52 52 43 52 52 43 43 57 57 57 57 57 57 57 57 43 39 39 43 57 57 57 57 52 52 57 57 57 57 57 57 57 57 57 52 52 57 57 57 52 52 52 57 59 57 43 43 41 44 35 35 35 41 41 34 38 35 35 28 36 28 35 41 38 22 15 13 13 24 27 42 52 57 43 43 29 29 28 39 43 52 52 57 57 52 52 43 44 35 35 35 47 38 43 34 34 31 43 43 52 52 52 50 44 43 35 35 38 44 43 52 52 44 43 41 41 33 30 38 28 33 33 43 43 52 52 52 52 44 43 43 57 43 43 32 35 35 43 33 24 19 13 13 11 24 24 39 43 46 43 43 31 31 15 15 12 24 19 28 28 36 32 42 28 27 15 14 13 21 19 26 26 36 36 37 43 46 39 37 37 26 24 12 12 12 19 16 18 11 11 11 23 21 22 22 22 31 31 39 32 39 39 43 43 47 32 30 17 17 16 29 30 23 22 12 12 12 22 19 21 18 8 8 8 8 8 9 15 13 23 23 30 25 24 16 18 11 13 12 19 11 11 12 22 13 13 13 11 11 12 24 19 24 27 31 28 26 24 20 20 18 22 19 17 19 19 17 20 29 24 17 14 23 18 15 16 16 16 10 10 10 10 10 10 13 13 11 11 11 11 12 12 12 16 19 12 11 10 10 10 10 10 21 13 9 8 8 8 8 10 10 9 10 9 10 10 10 10 11 21 15 10 10 10 10 10 10 13 16 15 12 9 9 9 10 10 11 18 18 16 10 10 10 10 12 11 11 12 14 14 15 19 11 8 8 8 8 11 12 7 9 9 9 10 15 10 10 8 9 12 9 9 10 9 9 10 9 9 9 10 9 10 13 9 11 12 10 13 13 11 9 8 12 13 10 8 8 8 8 10 8 8 8 8 8 8 8 6 6 8 8 9 8 8 8 8 8 8 7 7 6 6 8 8 8 9 10 8 9 10 10 10 10 10 10 10 8 8 8 8 8 10 10 10 10 10 10 10 8 6 6 6 6 7 9 18 23 19 19 15 13 13 11 8 8 13 15 18 18 22 10 10 8 8 6 6 8 8 8 8 8 8 8 8 9 11 10 11 14 12 12 12 16 16 11 11 11 11 11 10 10 8 8 8 8 14 9 12 12 15 17 11 8 6 6 8 6 9 6 8 8 8 8 8 8 8 8 9 8 8 6 6 8 6

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no097_c07.g1 MSMg01no097_c07.g1 CHROMAT_FILE:
MSMg01no097_c07.g1 PHD_FILE: MSMg01no097_c07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:47 2005
         (320 letters)



>mm_chr4_49054952_49055671
          Length = 720

 Score =  603 bits (312), Expect = e-177
 Identities = 315/316 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggacatgggaaagaaaaccaaatcaaaatgccttaagccagtccaagtgaacttctca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggacatgggaaagaaaaccaaatcaaaatgccttaagccagtccaagtgaacttctca 260

                                                                       
Query: 61  agtaactgaaacatctagtggtatcctaaggcacagtaaattcaacatcatcttacagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtaactgaaacatctagtggtatcctaaggcacagtaaattcaacatcatcttacagat 320

                                                                       
Query: 121 ataatccttatggtattcccagtcttacagtgcctcaactgcttagtgtcctagtaagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataatccttatggtattcccagtcttacagtgcctcaactgcttagtgtcctagtaagga 380

                                                                       
Query: 181 aaaacatgacagttttccttttgtgaattttgacctaattctctagggttctatcattta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaacatgacagttttccttttgtgaattttgacctaattctctagggttctatcattta 440

                                                                       
Query: 241 ccatctgctggaaaccacagtggctaggacagcggaaagcctgatccactgggttgggat 300
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 441 ccatctgctggaaaccacagtggctaggacagtggaaagcctgatccactgggttgggat 500

                           
Query: 301 tctaggctcatgctta 316
           ||||||||||||||||
Sbjct: 501 tctaggctcatgctta 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information