BAC Information

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BAC

Clone NameMSMg01-098D07
Chromosome4 (Build37)
Map Location 105,436,216 - 105,598,349
singlet/doubletdoublet
Overlap genePpia-ps4_954.1
Upstream geneC8b, C8a, 1700024P16Rik, Prkaa2, LOC100039513, Ppap2b, LOC433742, LOC665518, LOC434381
Downstream geneMap1lc3, LOC384039, Usp24, LOC100039616, Pcsk9, Bsnd, Tmem61, Dhcr24, BC055111, Ttc22, Pars2, Ttc4, Gm1027, BC026682, Acot11, Ssbp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098D07.T7 (MSMg01no098_d07.b1)MSMg01-098D07.TJ (MSMg01no098_d07.g1)
ACCAG314446AG314447
length678700
length of high quality
(start - end)		518 (19 - 536)494 (71 - 564)
definitionCHROMAT_FILE: MSMg01no098_d07.b1 PHD_FILE: MSMg01no098_d07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:14 2005CHROMAT_FILE: MSMg01no098_d07.g1 PHD_FILE: MSMg01no098_d07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,597,841 - 105,598,349)(105,436,216 - 105,436,709)
sequence
AACTACCTATCGAGAGAGGATCCGCGGAATTCCAGAGCTCTGAGCATTGG
TTGAAGCTGGCTTGGATGAGCTTCATCTAGTCTCTGATTAATGGGAGGAC
TTTCTTTTTCTTCACATGAAGACATTTGTCATAACAGAGGATGTACCATA
GAGTGAGGTCAATAGGGAGGACATTCTGGTATGGCCAGAGGTTGGCCTGG
ATCCAACAATCTTACAGAGTGCCCAGGCTCAGCAGCATGTTTGCCATTCT
CACCCAGAAGACTCAAGAAGTTGGGAATTAGGCTGGCTCATGAGCTCCTC
TATCCATTTACCTATTGCCTCCCTCTTACAGATGGACAAGTAAGGCCCAT
AGAAAGCAAGAACTCTCACCTCTCACCTCTGCTGGATTAGCTCTACATGG
CTTTACCATCATCCCGAGTGGTGTCTCCAATTAAACCAATCTAGGCCTTT
CTCCAGGCTTTGCCTTGAACACTAAGTACACATGTGCACAAGTAATTGAA
TAACTTCGTTTGTTGACATCTTTAGGGGATGCATGGCTGCTGTAAGATTT
TTCAGAATGGGGTCTGTGCGGTGCACCTCTGTGTCTACCACAAGAGGGAA
GACTTCTCACTTCTTTCATGCTCTGGTTTTTCCTTCCTTGAAATTCTCAA
CTGTAGACTGACCTCCTTTAATCTCACG

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTGACCCAAATGTGTTTTATGAGTGTTTTC
CTGATATCATAGTATGGCCATTTATGGCTGTTGAAGAATAGACTGTTAAG
AGTCATTTCATGGGACAAGAGACTCCAGAATGGTTATAAAAAGGCAATCA
TTCTGCACAGCACGCCTTCTGGAGAGTGGCTCTGCTAAGAAATTGGCATC
CGTCCTGGTCTTCTTCCCCAGGTCATCTTCATTTGCTTCGATTCCCGAGT
TGCTGGGAGATATAAAAAACAGGTGCGCTTTGATGGCAACAGCTTTTGCT
ACTGAAAGATTCCATTCCTCAAACCCTCCAAAACTTAAAGGGGAATAAAA
CTGCCTACAAAGGATTTTTCCTTTGGACAACCCTAACTCTGATGACACAT
GAGGTTCAAGTCCTGGCTGCCATCAGCACTAAGAAATCTGTCCATGAACC
GTCCTCTATACTTTGTATTTCTAAAATTTACACTTGCCACCTGGGTTTAT
GCATCTCCATGGAAGCACAGGGCAGAGAGTCTGAGCCTTGCAAGGAGTGT
AAGCATGTTCTAAAGAAGGCCTGCAGGTAAAGAACAAATTCATATTCAGG
ATCCTCCTATCTCACCCCTCCTTCACGCAAGCCTACCTTCAGACAAGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_d07.b1 MSMg01no098_d07.b1 CHROMAT_FILE:
MSMg01no098_d07.b1 PHD_FILE: MSMg01no098_d07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:14 2005
         (518 letters)



>mm_chr4_105597633_105598549
          Length = 917

 Score =  855 bits (442), Expect = 0.0
 Identities = 492/516 (95%), Gaps = 13/516 (2%)
 Strand = Plus / Minus

                                                                       
Query: 9   gaattccagagctctgagcattggttgaagctggcttggatgagcttcatctagtctctg 68
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 gaattccagagctttgagcattggttgaagctggcttggatgagcttcatctagtctctg 658

                                                                       
Query: 69  attaatgggaggactttctttttcttcacatgaagacatttgtcataacagaggatgtac 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 attaatgggaggactttctttttcttcacatgaagacatttgtcataacagaggatgtac 598

                                                                       
Query: 129 catagagtgaggtcaatagggaggacattctggtatggccagaggttggcctggatccaa 188
           |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct: 597 catagagtgaggtcaatagggaggacattctgatatggccagaggtgggcctggatccaa 538

                                                                       
Query: 189 caatcttacagagtgcccaggctcagcagcatgtttgccattctcacccagaagactcaa 248
           ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 caaccttacagagagcccaggctcagcagcatgtttgccattctcacccagaagactcaa 478

                                                                       
Query: 249 gaagttgggaattaggctggctcatgagctcctctatccatttacctattgcctccctct 308
           |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 477 gaagttgggaattaggctggctcatgagctcctctatccatttacctactgtctccctct 418

                                                                       
Query: 309 tacagatggacaagtaaggcccatagaaagcaagaactctcacctctcacctctgctgga 368
           |||||||||| |||||||||||||||||||||||||||||||| ||||       |||||
Sbjct: 417 tacagatggataagtaaggcccatagaaagcaagaactctcacttctc-------ctgga 365

                                                                       
Query: 369 ttagctctacatggctttaccatcatcccgagtggtgtctccaattaaaccaatctaggc 428
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ttagctctacatggcttcaccatcatcccgagtggtgtctccaattaaaccaatctaggc 305

                                                                       
Query: 429 ctttctccaggctttgccttgaacactaagtac------acatgtgcacaagtaattgaa 482
           |||||||||||||||||||||||||||||||||      |||||||||||||||||||||
Sbjct: 304 ctttctccaggctttgccttgaacactaagtactgagccacatgtgcacaagtaattgaa 245

                                               
Query: 483 taacttcgtttgttgacatctttaggggatgcatgg 518
           ||||||||||||||||||||||||| ||||||||||
Sbjct: 244 taacttcgtttgttgacatctttagaggatgcatgg 209


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 917
Length adjustment: 10
Effective length of query: 508
Effective length of database: 907
Effective search space:   460756
Effective search space used:   460756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no098_d07.g1 MSMg01no098_d07.g1 CHROMAT_FILE:
MSMg01no098_d07.g1 PHD_FILE: MSMg01no098_d07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:14 2005
         (494 letters)



>mm_chr4_105436016_105436909
          Length = 894

 Score =  924 bits (478), Expect = 0.0
 Identities = 490/494 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgacccaaatgtgttttatgagtgttttcctgatatcatagtatggccatttatggctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgacccaaatgtgttttatgagtgttttcctgatatcatagtatggccatttatggctg 260

                                                                       
Query: 61  ttgaagaatagactgttaagagtcatttcatgggacaagagactccagaatggttataaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgaagaatagactgttaagagtcatttcatgggacaagagactccagaatggttataaa 320

                                                                       
Query: 121 aaggcaatcattctgcacagcacgccttctggagagtggctctgctaagaaattggcatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaggcaatcattctgcacagcacgccttctggagagtggctctgctaagaaattggcatc 380

                                                                       
Query: 181 cgtcctggtcttcttccccaggtcatcttcatttgcttcgattcccgagttgctgggaga 240
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 cgtcctggtcttcttccccaggtcatcttcatttgcttcgtttcccgagttgctgggaga 440

                                                                       
Query: 241 tataaaaaacaggtgcgctttgatggcaacagcttttgctactgaaagattccattcctc 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 tataaaagacaggtgcgctttgatggcaacagcttttgctactgaaagattccatacctc 500

                                                                       
Query: 301 aaaccctccaaaacttaaaggggaataaaactgcctacaaaggatttttcctttggacaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaccctccaaaacttaaaggggaataaaactgcctacaaaggatttttcctttggacaa 560

                                                                       
Query: 361 ccctaactctgatgacacatgaggttcaagtcctggctgccatcagcactaagaaatctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccctaactctgatgacacatgaggttcaagtcctggctgccatcagcactaagaaatctg 620

                                                                       
Query: 421 tccatgaaccgtcctctatactttgtatttctaaaatttacacttgccacctgggtttat 480
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 621 tccatgaaccgtcctctatactttgtatttctaaaatctacacttgccacctgggtttat 680

                         
Query: 481 gcatctccatggaa 494
           ||||||||||||||
Sbjct: 681 gcatctccatggaa 694


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space:   427856
Effective search space used:   427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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