BAC Information

Click to search

BAC

Clone NameMSMg01-098E03
Chromosome4 (Build37)
Map Location 43,576,821 - 43,577,304
singlet/doubletsinglet
Overlap geneCreb3
Upstream geneEG623054, Ccl19-ps2, LOC100039331, LOC100039131, LOC100040035, LOC100040048, Il11ra2, LOC665962, LOC545614, 1700008B15Rik, Ccl19, Ccl21b, LOC100039205, LOC433698, BC049635, N28178, Dnajb5, 1700022I11Rik, Vcp, Fancg, Pigo, Stoml2, B230312A22Rik, Unc13b, 4930417M19Rik, Rusc2, 4833436C18Rik, Tesk1, Cd72, Sit1, Rmrp, LOC622404, E130306D19Rik, Car9, Tpm2, Tln1
Downstream geneGba2, 1110029E03Rik, LOC100039672, LOC100040179, Npr2, Spag8, Hint2, Serf2-ps, 4930412F15Rik, Olfr70, Olfr71, LOC100039781, 5430416O09Rik, A630077J23Rik, GA_x5J8B7W5BNN-892919-892147, Olfr159, Olfr29-ps1, Olfr156, LOC100040268, Olfr155, Reck, Glipr2, Ccin, Clta, Gne, LOC100040313, OTTMUSG00000007209, Rnf38, Melk, Pax5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098E03.T7 (MSMg01no098_e03.b1)MSMg01-098E03.TJ (MSMg01no098_e03.g1)
ACCAG314486AG314487
length712769
length of high quality
(start - end)
485 (43 - 527)194 (54 - 247)
definitionCHROMAT_FILE: MSMg01no098_e03.b1 PHD_FILE: MSMg01no098_e03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:18 2005CHROMAT_FILE: MSMg01no098_e03.g1 PHD_FILE: MSMg01no098_e03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAAAGGTATTCTTTCCCTACTACTAGTTTGAGGCCAGCCCAGCCTGGGC
TTACAAGACCCTGCCTTAACACAACGGCCAGAGGGCGTGGCTCAGCAGTG
AGCATTGATGAACATTCATGAGGTACTGTACTCCAATCCCAGTGGGTAGG
GGAATTATGGCATGCTCTGGCCAGTGTAAAGGAAGACAAGACAGTTACTA
TCCTAGGGACAGAACCACTATTGATAATTTCCAAATTCCGTTTCCTTTCC
TCCCAATATATTGCTCATTCATCTTGTAATAGTGATAGAGGGATAGGGGA
TGGTTTCTCACATAGCCCAAGCTTGCCTGAACTCAACATGAAGCTAAGTC
TGTCCGTTAATGCTGATCCACCTGCCCCAAATAAGTAAATATCTACATAT
CAGAAGTAAGACAATATTAAAAAGGCAAATGACATTATAAAAATTTGCCA
CAAAAACTAGATGCAGTATTCTTGTAATCCCAGCACGTGGTAAGTGACTT
TGAACTTGTGAAGACCTTCCTGCTTCTGCCTCTAGAGTGCTAGGGTTATA
GAGGGGTGGACCATCATGTCCCGCTTTGACGATTGTTGATGTTGTTAGAC
TGAATCAGCCTCTCAGGCATTTCTACCACTGAGTATGATTCGAGGTCTCT
AGATTTCCCCGT
GGCGGCCGCCTTGCAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXAGTCCCCCCCACCCAGCCCCCCATATCCACGTGGTAGAAGGAAAGAA
CCAACCACCGAAAGCTATCCTCTGACCGCCACGTGCACAGCCCCCTCCCC
AAAATAACTAATTGCAATAAATTTTCTAAAAGAAAACAGTGTGTGTGTGT
GTGTGTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGACTCTGTGTCCGTG
CGTTTCTGTCTTTTTTTCCTCCTCTCTCCCCCCCCTCTCCTTTCCTTTTT
TTTTTTCTTTCCCCCCTTCTTTTCGTCCTTCTCTTTTTTCTTTTTTTCTC
CCCCCTCTCTTCTTTGTTCTTCTTTTTTTTTTTTTTTTTTTTCTCCCCTT
TCCCTACTTTCTTTCTTTTTTTTCTTTCCCTCTATTTCTTCTTCCCTCCT
TTCTTTCCTCCCCCTCTTTTTATCCCTCTTTTCGTCTCTTTTCTCTATTT
TTTCCCCTCTCTTCCTCTCCTCCGCCTTCTCCTCCCCCTTTTTCTCTTCT
TTTCTCCTCTTCTTTCCTCTTTTTCCGTTTCCACACCATCTCACTATTCC
CTCCTCCTTTCCTCTTTCCTTTTCTTCTTTTTGACTCTCTCTTTCCCCGC
TTTTTCCCCCTTTTCTCTCTCCTTCTCTACATCTTTTCTCCTTTATTCCT
TTTCTCCCTCTCCTCTTCCTTTATTTCCCTTTTTGTCTTTTCTCTCTTCC
CTCCCTCCCCCTTTTCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_e03.b1 MSMg01no098_e03.b1 CHROMAT_FILE:
MSMg01no098_e03.b1 PHD_FILE: MSMg01no098_e03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:18 2005
         (485 letters)



>mm_chr4_43576618_43577504
          Length = 887

 Score =  882 bits (456), Expect = 0.0
 Identities = 477/484 (98%), Gaps = 2/484 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaaaggtattctttccctactac-tagtttgaggccagcccagcctgggcttac 62
           |||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 687 ggaattcaaaggcattctttccctactacatagtttgaggccagcccagcctgggtttac 628

                                                                       
Query: 63  aagaccctgccttaac-acaacggccagagggcgtggctcagcagtgagcattgatgaac 121
           |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 627 aagaccctgccttaacaacaagggccagagggcgtggctcagcagtgagcattgatgaac 568

                                                                       
Query: 122 attcatgaggtactgtactccaatcccagtgggtaggggaattatggcatgctctggcca 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 attcatgaggtactgtactccaatcccagtgggtaggggaattatggcatgctctggcca 508

                                                                       
Query: 182 gtgtaaaggaagacaagacagttactatcctagggacagaaccactattgataatttcca 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gtgtaaaggaagacaagacagttactatcctagggacagaaccactattgataatttcca 448

                                                                       
Query: 242 aattccgtttcctttcctcccaatatattgctcattcatcttgtaatagtgatagaggga 301
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 agttccgtttcctttcctcccaatatattgctcattcatcttgtaatagtgatagaggga 388

                                                                       
Query: 302 taggggatggtttctcacatagcccaagcttgcctgaactcaacatgaagctaagtctgt 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 taggggatggtttctcacatagcccaagcttgcctgaactcaacatgaagctaagtctgt 328

                                                                       
Query: 362 ccgttaatgctgatccacctgccccaaataagtaaatatctacatatcagaagtaagaca 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ccgttaatgctgatccacctgccccaaataagtaaatatctacatatcagaagtaagaca 268

                                                                       
Query: 422 atattaaaaaggcaaatgacattataaaaatttgccacaaaaactagatgcagtattctt 481
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 267 atattaaaaaggcaaatgacattaaaaaaatttgccacaaaaactagatgcagtattctt 208

               
Query: 482 gtaa 485
           ||||
Sbjct: 207 gtaa 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 887
Length adjustment: 10
Effective length of query: 475
Effective length of database: 877
Effective search space:   416575
Effective search space used:   416575
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)